Browse Element(s) Details


Os.50258.2.S1_a_at

Description gb:AK120376.1
DB_XREF= gi:37989999
TID=Os.50258.2
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.50258 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-039-H08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013071J20, full insert sequence.
FL= gb:AK061799.1 gb:AK120376.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0118011/11WRKY DNA binding domain containing protein, expressed
LOC_Os11g0118011/11Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g01140Os.8642.1.S1_a_at11/1112+74285..88965Nonphototropic hypocotyl protein 1, putative, expressed
LOC_Os12g01140Os.8642.4.S1_x_at11/1112+74285..88965Nonphototropic hypocotyl protein 1, putative, expressed
LOC_Os12g01140Os.53644.1.S1_at1/1112+74285..88965Nonphototropic hypocotyl protein 1, putative, expressed
LOC_Os12g01150OsAffx.7452.1.S1_at11/1112+90859..91328hypothetical protein
LOC_Os12g01160Os.7883.1.A1_at6/1112+92091..94423trans-2-enoyl-CoA reductase, mitochondrial precursor, putative
LOC_Os12g01170Os.2616.1.S1_at10/1112+95642..98986tonneau 1b, putative, expressed
LOC_Os12g01180Os.50258.2.S1_a_at11/1112+99803..103005WRKY DNA binding domain containing protein, expressed
LOC_Os12g01180Os.50258.1.S1_at11/1112+99803..103005WRKY DNA binding domain containing protein, expressed
LOC_Os12g01190Os.15622.1.S1_at11/1112+104922..111632RNA recognition motif family protein, expressed
LOC_Os12g01200Os.11572.1.S1_at11/1112+111744..119224leucine-rich repeat family protein, putative, expressed
LOC_Os12g01210Os.47934.1.S1_x_at11/1112+124923..127272pentatricopeptide, putative, expressed
LOC_Os12g01210Os.47934.1.S1_at11/1112+124923..127272pentatricopeptide, putative, expressed
LOC_Os12g01220Os.6077.1.S1_at11/1112+127352..132372expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0006508biological_processproteolysis
GO:0010214biological_processseed coat development
GO:0003700molecular_functiontranscription factor activity
GO:0008234molecular_functioncysteine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50258.2.S1_a_at--1123--4172Chr12:102443..102467 (25 bp)
CCCAGGCAGACAAACGGCTACGACT
LOC_Os12g01180
Os.50258.2.S1_a_at--909--1412Chr12:102436..102460 (25 bp)
AGACAAACGGCTACGACTGCGGCGT
LOC_Os12g01180
Os.50258.2.S1_a_at--235--2392Chr12:102432..102456 (25 bp)
AAACGGCTACGACTGCGGCGTCTTC
LOC_Os12g01180
Os.50258.2.S1_a_at--382--1992Chr12:102421..102445 (25 bp)
ACTGCGGCGTCTTCGTGCTAGCGGT
LOC_Os12g01180
Os.50258.2.S1_a_at--30--7152Chr12:102413..102437 (25 bp)
GTCTTCGTGCTAGCGGTGGCCAGGG
LOC_Os12g01180
Os.50258.2.S1_a_at--252--7552Chr12:102398..102422 (25 bp)
GTGGCCAGGGCCATCTGCAACTGGT
LOC_Os12g01180
Os.50258.2.S1_a_at--343--1092Chr12:102392..102416 (25 bp)
AGGGCCATCTGCAACTGGTGGCCCA
LOC_Os12g01180
Os.50258.2.S1_a_at--547--4152Chr12:102359..102383 (25 bp)
CGCCATTCCAATTCCGATTCCGATT
LOC_Os12g01180
Os.50258.2.S1_a_at--9--1052Chr12:102313..102337 (25 bp)
AGGTGAACGCCGACAGCGTCAAGGC
LOC_Os12g01180
Os.50258.2.S1_a_at--124--4652Chr12:102298..102322 (25 bp)
GCGTCAAGGCCATGAGGACCCAGCT
LOC_Os12g01180
Os.50258.2.S1_a_at--285--892Chr12:102292..102316 (25 bp)
AGGCCATGAGGACCCAGCTGCTGCA
LOC_Os12g01180
Target Sequence 
CCCAGGCAGACAAACGGCTACGACTGCGGCGTCTTCGTGCTAGCGGTGGCCAGGGCCATCTGCAACTGGTGGCCCACCCG
CGCCCGCCATTCCAATTCCGATTCCGATTGGTTGGAGGCCGTGAAGAGGGAGGTGAACGCCGACAGCGTCAAGGCCATGA
GGACCCAGCTGCTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50258.2.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis