Browse Element(s) Details


OsAffx.7452.1.S1_at

Description tigr:9640.m00015
TID=OsAffx.7452.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0115011/11hypothetical protein
LOC_Os11g0115411/11trans-2-enoyl-CoA reductase, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g01130OsAffx.7451.1.S1_at11/1112+69546..70241hypothetical protein
LOC_Os12g01140Os.8642.1.S1_a_at11/1112+74285..88965Nonphototropic hypocotyl protein 1, putative, expressed
LOC_Os12g01140Os.8642.4.S1_x_at11/1112+74285..88965Nonphototropic hypocotyl protein 1, putative, expressed
LOC_Os12g01140Os.53644.1.S1_at1/1112+74285..88965Nonphototropic hypocotyl protein 1, putative, expressed
LOC_Os12g01150OsAffx.7452.1.S1_at11/1112+90859..91328hypothetical protein
LOC_Os12g01160Os.7883.1.A1_at6/1112+92091..94423trans-2-enoyl-CoA reductase, mitochondrial precursor, putative
LOC_Os12g01170Os.2616.1.S1_at10/1112+95642..98986tonneau 1b, putative, expressed
LOC_Os12g01180Os.50258.2.S1_a_at11/1112+99803..103005WRKY DNA binding domain containing protein, expressed
LOC_Os12g01180Os.50258.1.S1_at11/1112+99803..103005WRKY DNA binding domain containing protein, expressed
LOC_Os12g01190Os.15622.1.S1_at11/1112+104922..111632RNA recognition motif family protein, expressed
LOC_Os12g01200Os.11572.1.S1_at11/1112+111744..119224leucine-rich repeat family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0030154biological_processcell differentiation
GO:0005739cellular_componentmitochondrion
GO:0008270molecular_functionzinc ion binding
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7452.1.S1_at--751--3912Chr12:90918..90942 (25 bp)
CTGGCGCACGTTGCGGAGCACCAGA
LOC_Os12g01150
OsAffx.7452.1.S1_at--345--5092Chr12:90923..90947 (25 bp)
GCACGTTGCGGAGCACCAGACGCGT
LOC_Os12g01150
OsAffx.7452.1.S1_at--1133--5072Chr12:90935..90959 (25 bp)
GCACCAGACGCGTGCGCCGTGTACA
LOC_Os12g01150
OsAffx.7452.1.S1_at--579--4492Chr12:90950..90974 (25 bp)
GCCGTGTACACTGCCATGACGACGA
LOC_Os12g01150
OsAffx.7452.1.S1_at--151--8012Chr12:90997..91021 (25 bp)
GGATGGGACAGCTCATTGTCAGACT
LOC_Os12g01150
OsAffx.7452.1.S1_at--56--9592Chr12:91009..91033 (25 bp)
TCATTGTCAGACTTCGCCTGGAGCT
LOC_Os12g01150
OsAffx.7452.1.S1_at--394--372Chr12:91121..91145 (25 bp)
ATCAAGACCAGATGCGGCGGTCTCT
LOC_Os12g01150
OsAffx.7452.1.S1_at--933--3772Chr12:91142..91166 (25 bp)
CTCTGCGGCTGAGACTGATGAGCTT
LOC_Os12g01150
OsAffx.7452.1.S1_at--600--5992Chr12:91152..91283 (25 bp)
GAGACTGATGAGCTTTAGGTCAAAC
LOC_Os12g01150
OsAffx.7452.1.S1_at--219--5892Chr12:91272..91292 (21 bp)
GAGCTTTAGGTCAAACTACCACGTA
LOC_Os12g01150
OsAffx.7452.1.S1_at--564--10053Chr12:91274..91298 (25 bp)
TAGGTCAAACTACCACGTAAGCGTC
LOC_Os12g01150
Target Sequence 
CTGGCGCACGTTGCGGAGCACCAGACGCGTGCGCCGTGTACACTGCCATGACGACGACAACGTGGAGGAAGGAGGAGGAG
GATGGGACAGCTCATTGTCAGACTTCGCCTGGAGCTCNAGCAAGGATGAGGAGGAGGAGGGCTCCACCTCCACTGAAGGT
GGGGAGTACGGTGGCCACGGNGGCGGTAGAAGGGAAAGGAGGAATCAAGACCAGATGCGGCGGTCTCTGCGGCTGAGACT
GATGAGCTTTAGGTCAAACTACCACGTAAGCGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7452.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis