Browse Element(s) Details


OsAffx.7451.1.S1_at

Description tigr:9640.m00013
TID=OsAffx.7451.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0113011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g01090NANA12+42782..49102retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g01100OsAffx.30760.1.S1_at11/1112+49744..50678hypothetical protein
LOC_Os12g01110OsAffx.30761.1.S1_at11/1112+51050..53138hypothetical protein
LOC_Os12g01110OsAffx.30761.2.S1_s_at11/1112+51050..53138hypothetical protein
LOC_Os12g01120OsAffx.31534.1.S1_at11/1112+63393..64004Homeobox domain containing protein
LOC_Os12g01130OsAffx.7451.1.S1_at11/1112+69546..70241hypothetical protein
LOC_Os12g01140Os.8642.1.S1_a_at11/1112+74285..88965Nonphototropic hypocotyl protein 1, putative, expressed
LOC_Os12g01140Os.8642.4.S1_x_at11/1112+74285..88965Nonphototropic hypocotyl protein 1, putative, expressed
LOC_Os12g01140Os.53644.1.S1_at1/1112+74285..88965Nonphototropic hypocotyl protein 1, putative, expressed
LOC_Os12g01150OsAffx.7452.1.S1_at11/1112+90859..91328hypothetical protein
LOC_Os12g01160Os.7883.1.A1_at6/1112+92091..94423trans-2-enoyl-CoA reductase, mitochondrial precursor, putative

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7451.1.S1_at--868--7372Chr12:69585..69609 (25 bp)
GTGACGACCGTCACAGGCTGTCGAG
LOC_Os12g01130
OsAffx.7451.1.S1_at--200--5992Chr12:69613..69637 (25 bp)
GAGACTGGGCCTACAAGCTGACGTG
LOC_Os12g01130
OsAffx.7451.1.S1_at--595--1613Chr12:69628..69652 (25 bp)
AGCTGACGTGGCAAAGGTCACCACC
LOC_Os12g01130
OsAffx.7451.1.S1_at--495--8472Chr12:69694..69984 (25 bp)
TGGCGCTGAGCGTTACCTTCTTGGG
LOC_Os12g01130
OsAffx.7451.1.S1_at--78--10692Chr12:69989..70013 (25 bp)
TTGCCTTCGAGTTTTTTCCTTCCTG
LOC_Os12g01130
OsAffx.7451.1.S1_at--673--10392Chr12:70002..70026 (25 bp)
TTTTCCTTCCTGTTTTGCTAGCTCA
LOC_Os12g01130
OsAffx.7451.1.S1_at--1091--10712Chr12:70016..70040 (25 bp)
TTGCTAGCTCAGGACACTTGGGTGT
LOC_Os12g01130
OsAffx.7451.1.S1_at--396--7653Chr12:70041..70065 (25 bp)
GGGAGAGCAACGATGACACCCTTGT
LOC_Os12g01130
OsAffx.7451.1.S1_at--582--2152Chr12:70056..70080 (25 bp)
ACACCCTTGTGATAGAGTCAGCGTT
LOC_Os12g01130
OsAffx.7451.1.S1_at--816--9632Chr12:70073..70097 (25 bp)
TCAGCGTTTTCGTGCTTTGGTGTAG
LOC_Os12g01130
OsAffx.7451.1.S1_at--1162--8612Chr12:70090..70114 (25 bp)
TGGTGTAGCAGGTTCATCTTCTCAG
LOC_Os12g01130
Target Sequence 
GTGACGACCGTCACAGGCTGTCGAGCAGGAGACTGGGCCTACAAGCTGACGTGGCAAAGGTCACCACCCGCATCTGTGCT
GACCTCCCCAACCTCAATGCCAAGCCTGTTGGCGCTGAGCGTTACCTTCTTGGGGGCATTGCCTTCGAGTTTTTTCCTTC
CTGTTTTGCTAGCTCAGGACACTTGGGTGTGGGAGAGCAACGATGACACCCTTGTGATAGAGTCAGCGTTTTCGTGCTTT
GGTGTAGCAGGTTCATCTTCTCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7451.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis