Browse Element(s) Details


Os.7893.1.S1_at

Description gb:AK066658.1
DB_XREF= gi:32976676
TID=Os.7893.1
CNT=71
FEA=FLmRNA
TIER=FL+Stack
STK=11
UG=Os.7893 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013071N11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013071N11, full insert sequence.
FL= gb:AK066658.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3791011/11HMG1/2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g37860Os.16852.1.S1_at11/119+21827697..21833011Proliferating-cell nucleolar antigen p120, putative, expressed
LOC_Os09g37870OsAffx.30179.1.S1_at11/119+21833773..21835113hypothetical protein
LOC_Os09g37880OsAffx.30180.2.S1_at11/119+21840875..21844761D-mannose binding lectin family protein
LOC_Os09g37880OsAffx.30180.4.S1_x_at1/119+21840875..21844761D-mannose binding lectin family protein
LOC_Os09g37890OsAffx.30180.3.S1_at11/119+21846101..21849537D-mannose binding lectin family protein
LOC_Os09g37900OsAffx.30182.1.S1_at11/119+21850940..21852804hypothetical protein
LOC_Os09g37910Os.57443.1.S1_x_at11/119+21856391..21858472HMG1/2, putative, expressed
LOC_Os09g37910Os.7893.1.S1_at11/119+21856391..21858472HMG1/2, putative, expressed
LOC_Os09g37910Os.57484.1.S1_x_at2/119+21856391..21858472HMG1/2, putative, expressed
LOC_Os09g37920OsAffx.18040.1.S1_at11/119+21859936..21867685DNA repair helicase family protein, expressed
LOC_Os09g37930OsAffx.30183.1.S1_at11/119+21868379..21878106ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein, expressed
LOC_Os09g37940OsAffx.30187.3.S1_at8/119+21878722..21879228hypothetical protein
LOC_Os09g37949Os.49814.1.S1_at11/119+21880684..21884141Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006333biological_processchromatin assembly or disassembly
GO:0000785cellular_componentchromatin
GO:0003677molecular_functionDNA binding
GO:0003682molecular_functionchromatin binding
GO:0003700molecular_functiontranscription factor activity
GO:0030527molecular_functionstructural constituent of chromatin
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7893.1.S1_at--917--9731Chr09:21857801..21857825 (25 bp)
TCAAGGCTGAGTACACCAAGAAGAT
LOC_Os09g37910
Os.7893.1.S1_at--732--4851Chr09:21857940..21857964 (25 bp)
GCTACCTCAGGCGACTCTGACAAGT
LOC_Os09g37910
Os.7893.1.S1_at--106--7271Chr09:21857963..21857987 (25 bp)
GTCCAAGTCCGAGGTGAACGACGAG
LOC_Os09g37910
Os.7893.1.S1_at--342--5571Chr09:21858133..21858157 (25 bp)
GAAAGTTCTCGAGTCGGCCTAACCA
LOC_Os09g37910
Os.7893.1.S1_at--671--3291Chr09:21858156..21858180 (25 bp)
CAAAGTGGACGTTGCTGGTTGCTGC
LOC_Os09g37910
Os.7893.1.S1_at--1010--4311Chr09:21858182..21858206 (25 bp)
CCTTGCTAGTGTTCGGATGTTGCTG
LOC_Os09g37910
Os.7893.1.S1_at--296--6291Chr09:21858197..21858221 (25 bp)
GATGTTGCTGCCTTTAGCTTTTAGT
LOC_Os09g37910
Os.7893.1.S1_at--366--4871Chr09:21858213..21858237 (25 bp)
GCTTTTAGTCTTAGAGGTCTCCTCC
LOC_Os09g37910
Os.7893.1.S1_at--1106--10031Chr09:21858224..21858248 (25 bp)
TAGAGGTCTCCTCCTGTAGCTTAGC
LOC_Os09g37910
Os.7893.1.S1_at--85--6971Chr09:21858239..21858263 (25 bp)
GTAGCTTAGCTCTCATGTGGTGTCC
LOC_Os09g37910
Os.7893.1.S1_at--556--431Chr09:21858289..21858313 (25 bp)
ATCTTGTCGTCTGTTTTGTCTCACT
LOC_Os09g37910
Target Sequence 
TCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAGGCAGGAGGCCCGGCTACCTCAGGCGACTCTGAC
AAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGCGGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAA
GTTCTCGAGTCGGCCTAACCAAAGTGGACGTTGCTGGTTGCTGCTCCTTGCTAGTGTTCGGATGTTGCTGCCTTTAGCTT
TTAGTCTTAGAGGTCTCCTCCTGTAGCTTAGCTCTCATGTGGTGTCCTCGCTCTCTTCGGCACTTGACCACCATCTTGTC
GTCTGTTTTGTCTCACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7893.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis