Browse Element(s) Details


Os.7897.1.S2_s_at

Description gb:AK120022.1
DB_XREF= gi:37989645
TID=Os.7897.1
CNT=61
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7897 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-041-F01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-186-C04, full insert sequence.
FL= gb:AK120339.1 gb:AK120022.1 gb:AK061882.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2896010/11Acyltransferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g28930OsAffx.4463.1.S1_at11/115+16873669..16879752hypothetical protein
LOC_Os05g28930OsAffx.17054.1.S1_at1/115+16873669..16879752hypothetical protein
LOC_Os05g28940Os.7201.1.S1_at11/115+16885103..16891203Developmentally regulated GTP-binding protein 2, putative, expressed
LOC_Os05g28950OsAffx.4464.1.S1_s_at11/115+16891972..16894985CAAX amino terminal protease family protein, expressed
LOC_Os05g28950OsAffx.4464.1.S1_at7/115+16891972..16894985CAAX amino terminal protease family protein, expressed
LOC_Os05g28960Os.27783.1.S1_at11/115+16896441..16901206Acyltransferase family protein, expressed
LOC_Os05g28960Os.7897.1.S2_s_at10/115+16896441..16901206Acyltransferase family protein, expressed
LOC_Os05g28970OsAffx.4465.1.S1_at11/115+16906061..16907877hypothetical protein
LOC_Os05g28980Os.53116.1.S1_at11/115+16907947..16914637expressed protein
LOC_Os05g28980Os.7465.1.S1_at11/115+16907947..16914637expressed protein
LOC_Os05g28980OsAffx.27071.1.S1_at10/115+16907947..16914637expressed protein
LOC_Os05g28990OsAffx.27072.1.S1_at11/115+16914304..16916237hypothetical protein
LOC_Os05g29000OsAffx.27073.1.S1_at11/115+16917740..16918258expressed protein
LOC_Os05g29010Os.9121.1.S1_at11/115+16925514..16930747DNA primase small subunit, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0008415molecular_functionacyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7897.1.S2_s_at--1064--4831Chr05:16896761..16896785 (25 bp)
GCTAATTTGGATATGCGTGCCGTTA
LOC_Os05g28960
Os.7897.1.S2_s_at--1134--4651Chr05:16896747..16896771 (25 bp)
GCGTGCCGTTAATTTTCCTATTTGT
LOC_Os05g28960
Os.7897.1.S2_s_at--598--211Chr05:16896728..16896752 (25 bp)
ATTTGTCCCTGAAATGTTATCGTAC
LOC_Os05g28960
Os.7897.1.S2_s_at--327--1211Chr05:16896688..16896712 (25 bp)
AGTTTGCCATTAGTTTTTCTCACCA
LOC_Os05g28960
Os.7897.1.S2_s_at--740--10051Chr05:16896678..16896702 (25 bp)
TAGTTTTTCTCACCAAAGGGATCCT
LOC_Os05g28960
Os.7897.1.S2_s_at--503--2871Chr05:16896663..16896687 (25 bp)
AAGGGATCCTTTGTAGATGACCACA
LOC_Os05g28960
Os.7897.1.S2_s_at--168--6311Chr05:16896648..16896672 (25 bp)
GATGACCACAGAATTTTGCAGCAAG
LOC_Os05g28960
Os.7897.1.S2_s_at--124--5251Chr05:16896624..16896648 (25 bp)
GAATCAGCTAGGCATTAAACCACAG
LOC_Os05g28960
Os.7897.1.S2_s_at--1043--3191Chr05:16896503..16896527 (25 bp)
CAATGTTGTATCTGGTGTACCTTCC
LOC_Os05g28960
Os.7897.1.S2_s_at--305--7751Chr05:16896490..16896514 (25 bp)
GGTGTACCTTCCAACTAGCGAATTA
LOC_Os05g28960
Os.7897.1.S2_s_at--922--7851Chr05:16896441..16896465 (25 bp)
GGTTACCTATGTGATCCATTTCCCT
NONE
Target Sequence 
GCTAATTTGGATATGCGTGCCGTTAATTTTCCTATTTGTCCCTGAAATGTTATCGTACATGAACCGAAGTCAAAGTTTGC
CATTAGTTTTTCTCACCAAAGGGATCCTTTGTAGATGACCACAGAATTTTGCAGCAAGAATCAGCTAGGCATTAAACCAC
AGGAATTAATACATAGGGGGATGAAGGGGGTAACCATAGAAATTTCCATTTTCTTCANCTCAGGATCATGTTTAGTAGTG
TTGANGTGTCATCACTAACAATGTTGTATCTGGTGTACCTTCCAACTAGCGAATTACCAATCAAATGTAATAGTTTNTAT
GGTTACCTATGTGATCCATTTCCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7897.1.S2_s_at     

Putative homologies in rice

Putative homologies in arabidopsis