Browse Element(s) Details


Os.7914.2.S1_at

Description gb:AK061231.1
DB_XREF= gi:32971249
TID=Os.7914.2
CNT=10
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7914 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-211-A09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-211-A09, full insert sequence.
FL= gb:AK061231.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0940011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g09370Os.52103.1.S1_at11/115+5232274..5240161expressed protein
LOC_Os05g09370Os.10656.1.S1_at11/115+5232274..5240161expressed protein
LOC_Os05g09380Os.6365.1.S1_at11/115+5245044..5248797actin binding protein family, putative, expressed
LOC_Os05g09389OsAffx.14261.2.S1_at11/115+5252219..5253360Transposable element protein, putative, rve
LOC_Os05g09389OsAffx.14261.4.S1_x_at1/115+5252219..5253360Transposable element protein, putative, rve
LOC_Os05g09400Os.7914.2.S1_at11/115+5253550..5257112expressed protein
LOC_Os05g09400OsAffx.26384.8.S1_x_at11/115+5253550..5257112expressed protein
LOC_Os05g09400Os.7914.1.S1_at10/115+5253550..5257112expressed protein
LOC_Os05g09400Os.46102.1.S1_at10/115+5253550..5257112expressed protein
LOC_Os05g09410OsAffx.4286.1.S1_at11/115+5257925..5259624Histidine-containing phosphotransfer protein 4, putative
LOC_Os05g09420OsAffx.26798.1.S1_at8/115+5266074..5268258hypothetical protein
LOC_Os05g09430OsAffx.26799.1.S1_at11/115+5271925..5272683expressed protein
LOC_Os05g09440Os.9145.1.S1_at11/115+5272909..5276768NADP-dependent malic enzyme, chloroplast precursor, putative, expressed
LOC_Os05g09450OsAffx.14612.1.S1_at11/115+5281260..5282687hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7914.2.S1_at--572--10551Chr05:5256087..5256111 (25 bp)
TTCTTGCTAGAAACCAGGGAAGATG
LOC_Os05g09400
Os.7914.2.S1_at--292--9071Chr05:5256083..5256107 (25 bp)
TGCTAGAAACCAGGGAAGATGCAGT
LOC_Os05g09400
Os.7914.2.S1_at--94--10391Chr05:5256047..5256071 (25 bp)
TTTTCTTTTCTAGCTGTGTCCCTGA
LOC_Os05g09400
Os.7914.2.S1_at--498--10571Chr05:5256045..5256069 (25 bp)
TTCTTTTCTAGCTGTGTCCCTGAAT
LOC_Os05g09400
Os.7914.2.S1_at--172--10391Chr05:5256042..5256066 (25 bp)
TTTTCTAGCTGTGTCCCTGAATTCA
LOC_Os05g09400
Os.7914.2.S1_at--951--10571Chr05:5256040..5256064 (25 bp)
TTCTAGCTGTGTCCCTGAATTCAAG
LOC_Os05g09400
Os.7914.2.S1_at--133--10011Chr05:5256037..5256061 (25 bp)
TAGCTGTGTCCCTGAATTCAAGCAC
LOC_Os05g09400
Os.7914.2.S1_at--235--8671Chr05:5256033..5256057 (25 bp)
TGTGTCCCTGAATTCAAGCACCTTT
LOC_Os05g09400
Os.7914.2.S1_at--238--8691Chr05:5256031..5256055 (25 bp)
TGTCCCTGAATTCAAGCACCTTTTG
LOC_Os05g09400
Os.7914.2.S1_at--156--7251Chr05:5256030..5256054 (25 bp)
GTCCCTGAATTCAAGCACCTTTTGA
LOC_Os05g09400
Os.7914.2.S1_at--821--5211Chr05:5256024..5256048 (25 bp)
GAATTCAAGCACCTTTTGACATGCT
LOC_Os05g09400
Target Sequence 
TTCTTGCTAGAAACCAGGGAAGATGCAGTATCTCTTTTTTTTTTCTTTTCTAGCTGTGTCCCTGAATTCAAGCACCTTTT
GACATGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7914.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis