Browse Element(s) Details


Os.7937.1.S1_s_at

Description gb:AK069288.1
DB_XREF= gi:32979312
TID=Os.7937.1
CNT=37
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.7937 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023014P04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023014P04, full insert sequence.
FL= gb:AK069288.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g5151011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g51480Os.9174.1.S1_a_at11/116+31180672..31183728expressed protein
LOC_Os06g51480Os.9174.1.S1_at11/116+31180672..31183728expressed protein
LOC_Os06g51480Os.9174.2.S1_x_at11/116+31180672..31183728expressed protein
LOC_Os06g51490Os.15074.1.S1_at11/116+31183920..31186614PHD-finger family protein, expressed
LOC_Os06g51500OsAffx.5166.1.S1_at11/116+31203001..31205774expressed protein
LOC_Os06g51510Os.7937.1.S1_s_at11/116+31207369..31210394expressed protein
LOC_Os06g51520Os.49118.1.S1_at11/116+31211405..31216520lysine ketoglutarate reductase trans-splicing related 1, putative, expressed
LOC_Os06g51530OsAffx.28214.1.S1_at8/116+31222503..31225588ribosomal protein L29 containing protein
LOC_Os06g51530Os.19501.2.S1_x_at1/116+31222503..31225588ribosomal protein L29 containing protein
LOC_Os06g51540NANA6+31227111..31230939Transposable element protein, putative, Retrotrans_gag
LOC_Os06g51550Os.50780.1.S1_at1/116+31234133..31236941retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7937.1.S1_s_at--440--1491Chr06:31207739..31207763 (25 bp)
AGCAACTGAACCCATTGCTGCTGCC
LOC_Os06g51510
Os.7937.1.S1_s_at--129--1111Chr06:31207712..31207736 (25 bp)
AGTGATAACGGCTTGGCTCAGCTGC
LOC_Os06g51510
Os.7937.1.S1_s_at--619--351Chr06:31207708..31207732 (25 bp)
ATAACGGCTTGGCTCAGCTGCTAAT
LOC_Os06g51510
Os.7937.1.S1_s_at--725--7851Chr06:31207683..31207707 (25 bp)
GGTTTCCTGTAGGACACAGAGGAGA
LOC_Os06g51510
Os.7937.1.S1_s_at--895--2311Chr06:31207600..31207624 (25 bp)
AAAGTGTTGTGTTGTGTTGGGACCT
LOC_Os06g51510
Os.7937.1.S1_s_at--350--8791Chr06:31207591..31207615 (25 bp)
TGTTGTGTTGGGACCTTGATTCGTT
LOC_Os06g51510
Os.7937.1.S1_s_at--983--1731Chr06:31207579..31207603 (25 bp)
ACCTTGATTCGTTGCTACATATATT
LOC_Os06g51510
Os.7937.1.S1_s_at--144--10811Chr06:31207448..31207472 (25 bp)
TTGTACTATTTTCCAGGTTGTCGGA
LOC_Os06g51510
Os.7937.1.S1_s_at--1029--10171Chr06:31207442..31207466 (25 bp)
TATTTTCCAGGTTGTCGGATTTTGG
LOC_Os06g51510
Os.7937.1.S1_s_at--377--10231Chr06:31207422..31207446 (25 bp)
TTTGGTAAACTCAACTGTGTATTTT
LOC_Os06g51510
Os.7937.1.S1_s_at--115--3751Chr06:31207413..31207437 (25 bp)
CTCAACTGTGTATTTTATTTGCATA
LOC_Os06g51510
Target Sequence 
AGCAACTGAACCCATTGCTGCTGCCTGAGTGATAACGGCTTGGCTCAGCTGCTAATGGTTTCCTGTAGGACACAGAGGAG
AAGGCAGAGTGTCTGGCACGGATGTGCGCCACGTATGGTGTAGCGTTGTTTTTGTTAAGAAAGTGTTGTGTTGTGTTGGG
ACCTTGATTCGTTGCTACATATATTGTTATTGCATTTTGTAGAGAAAAGATGAGAGGGGATATATCCTGGCAATAATAAG
TTAAATCTGTTGTATTAGGATGTGCGTGATTGTGTGATGTTGTGACGGTGGTTGTACTATTTTCCAGGTTGTCGGATTTT
GGTAAACTCAACTGTGTATTTTATTTGCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7937.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis