Browse Element(s) Details


Os.7943.3.S1_s_at

Description gb:AK099810.1
DB_XREF= gi:32985019
TID=Os.7943.3
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.7943 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-045-C01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013099D07, full insert sequence.
FL= gb:AK099810.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g011308/11MRG family protein, expressed
LOC_Os11g343008/11MRG family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g01080NANA4+53570..55208hypothetical protein
LOC_Os04g01089OsAffx.31844.1.S1_at4/114+57408..58289NA
LOC_Os04g01089OsAffx.2606.1.S1_at2/114+57408..58289NA
LOC_Os04g01089OsAffx.1436.1.S1_x_at1/114+57408..58289NA
LOC_Os04g01089OsAffx.8939.1.S1_x_at1/114+57408..58289NA
LOC_Os04g01100NANA4+60275..61237hAT family dimerisation domain containing protein
LOC_Os04g01110NANA4+61795..63463BED zinc finger family protein
LOC_Os04g01120NANA4+64513..67460retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g01124OsAffx.25819.3.S1_at11/114+73522..74064hypothetical protein
LOC_Os04g01124OsAffx.25819.1.S1_at1/114+73522..74064hypothetical protein
LOC_Os04g01130Os.39952.1.S1_at11/114+79564..88464MRG family protein, expressed
LOC_Os04g01130Os.7943.3.S1_s_at8/114+79564..88464MRG family protein, expressed
LOC_Os04g01130OsAffx.31293.1.S1_at2/114+79564..88464MRG family protein, expressed
LOC_Os04g01140Os.8511.1.S1_s_at11/114+90337..92174Cytochrome P450 family protein, expressed
LOC_Os04g01150Os.8082.1.S1_at11/114+106160..110245phagocytosis and cell motility protein ELMO1, putative, expressed
LOC_Os04g01160OsAffx.13605.1.S1_x_at11/114+112181..115463Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g01160OsAffx.13605.1.S1_at11/114+112181..115463Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7943.3.S1_s_at--80--6552Chr04:86765..86789 (25 bp)
GATTTTGAAAGGATTGCGATGCTAC
LOC_Os04g01130
Os.7943.3.S1_s_at--627--2912Chr04:86773..86797 (25 bp)
AAGGATTGCGATGCTACTTTGATAA
LOC_Os04g01130
Os.7943.3.S1_s_at--114--9892Chr04:86787..86811 (25 bp)
TACTTTGATAAAGCATTGCCTGCAA
LOC_Os04g01130
Os.7943.3.S1_s_at--923--3551NONE
CATCTACTGCGCCTTTTTGTGAAAT
NONE
Os.7943.3.S1_s_at--545--9911NONE
TACTGCGCCTTTTTGTGAAATTGCC
NONE
Os.7943.3.S1_s_at--965--4511NONE
GCGCCTTTTTGTGAAATTGCCGGAG
NONE
Os.7943.3.S1_s_at--649--7072Chr04:87663..87687 (25 bp)
GTGAAATTGCCGGAGCTACTTGCGT
LOC_Os04g01130
Os.7943.3.S1_s_at--441--3152Chr04:87667..87691 (25 bp)
AATTGCCGGAGCTACTTGCGTCTGT
LOC_Os04g01130
Os.7943.3.S1_s_at--718--6712Chr04:88087..88111 (25 bp)
GTTCGTTCTTCCTTTCTGCGTATGA
LOC_Os04g01130
Os.7943.3.S1_s_at--562--4032Chr04:88090..88114 (25 bp)
CGTTCTTCCTTTCTGCGTATGATGG
LOC_Os04g01130
Os.7943.3.S1_s_at--903--8572Chr04:88115..88139 (25 bp)
TGGTTCTAAAGGTACTGATGGGATA
LOC_Os04g01130
Target Sequence 
GATTTTGAAAGGATTGCGATGCTACTTTGATAAAGCATTGCCTGCAATGCTTTTGTATAAGAAAGAGCGACAGCAGTACT
CTGAAGAGGTTAAAGGCGATGTTTCGCCCTCAACTATATATGGAGCTGAGCATCTACTGCGCCTTTTTGTGAAATTGCCG
GAGCTACTTGCGTCTGTCAACATGGAAGAAGATGCACTCAACAAACTACAGCAGAAATTGCTGGACATTCTCAAGTTTCT
GCAGAAGAATCAGAGTTCGTTCTTCCTTTCTGCGTATGATGGTGGTTCTAAAGGTACTGATGGGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7943.3.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis