Browse Element(s) Details


Os.7961.1.S1_at

Description gb:AK068639.1
DB_XREF= gi:32978656
TID=Os.7961.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7961 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013155J08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013155J08, full insert sequence.
FL= gb:AY184809.1 gb:AK068639.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g418104/11expressed protein
LOC_Os07g418002/11Peroxisome assembly protein 10, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g41750Os.5498.1.S1_at11/117+25017743..2502001540S ribosomal protein S3-A, putative, expressed
LOC_Os07g41760OsAffx.28863.1.S1_at11/117+25020595..25021008hypothetical protein
LOC_Os07g41770Os.31312.5.S1_x_at4/117+25023246..25026589retrotransposon protein, putative, unclassified
LOC_Os07g41770Os.31312.2.S1_x_at3/117+25023246..25026589retrotransposon protein, putative, unclassified
LOC_Os07g41780NANA7+25027215..25033370retrotransposon protein, putative, unclassified
LOC_Os07g41790Os.12302.1.S1_at11/117+25034930..25037385small nuclear ribonucleoprotein G, putative, expressed
LOC_Os07g41800Os.7961.1.S1_s_at11/117+25037542..25042037Peroxisome assembly protein 10, putative, expressed
LOC_Os07g41800Os.5260.1.S1_at11/117+25037542..25042037Peroxisome assembly protein 10, putative, expressed
LOC_Os07g41800Os.7961.1.S1_at2/117+25037542..25042037Peroxisome assembly protein 10, putative, expressed
LOC_Os07g41810Os.7961.1.S1_s_at11/117+25043658..25046687expressed protein
LOC_Os07g41810Os.7961.1.S1_at4/117+25043658..25046687expressed protein
LOC_Os07g41810Os.11984.1.S1_at3/117+25043658..25046687expressed protein
LOC_Os07g41820Os.11984.1.S2_at11/117+25047421..25049880expressed protein
LOC_Os07g41820Os.11984.1.S1_at11/117+25047421..25049880expressed protein
LOC_Os07g41830OsAffx.16679.1.S1_at11/117+25050161..25052503expressed protein
LOC_Os07g41840OsAffx.28864.1.S1_at11/117+25059228..25059732hypothetical protein
LOC_Os07g41850OsAffx.5596.1.S1_at11/117+25061621..25062850C1-like domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007031biological_processperoxisome organization and biogenesis
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0000299cellular_componentintegral to membrane of membrane fraction
GO:0005777cellular_componentperoxisome
GO:0005829cellular_componentcytosol
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7961.1.S1_at--513--4391NONE
GCCAACCTCTGAGAGCTCTAGAATT
NONE
Os.7961.1.S1_at--1122--4371NONE
CCAACCTCTGAGAGCTCTAGAATTG
NONE
Os.7961.1.S1_at--492--3251NONE
CAACCTCTGAGAGCTCTAGAATTGT
NONE
Os.7961.1.S1_at--741--2631NONE
AACCTCTGAGAGCTCTAGAATTGTT
NONE
Os.7961.1.S1_at--1112--6651Chr07:25045355..25045379 (25 bp)
GTTCATACCTTGTGGGAATGGGTTC
LOC_Os07g41810
Os.7961.1.S1_at--336--10531Chr07:25045356..25045380 (25 bp)
TTCATACCTTGTGGGAATGGGTTCT
LOC_Os07g41810
Os.7961.1.S1_at--743--9592Chr07:25045357..25045381 (25 bp)
TCATACCTTGTGGGAATGGGTTCTT
LOC_Os07g41810
Os.7961.1.S1_at--48--9972Chr07:25045360..25045384 (25 bp)
TACCTTGTGGGAATGGGTTCTTCGG
LOC_Os07g41810
Os.7961.1.S1_at--81--3951NONE
CGGAAATGGCCTTCGGATTGTATTA
NONE
Os.7961.1.S1_at--219--8151NONE
GGAAATGGCCTTCGGATTGTATTAT
NONE
Os.7961.1.S1_at--1106--2291NONE
AAATGGCCTTCGGATTGTATTATCA
NONE
Target Sequence 
GCCAACCTCTGAGAGCTCTAGAATTGTTGCACGTGGTATTGCCCTCGATGACTCTCAGCTTGATGACCATTCTGAAAGTG
ATAGTTCTAGTATAGGCACTGCAGCACAACCATCCCCAATTAGGAACAGTCCTTCAAGAAGCTTGAGTTTTTCTCATTTG
TCAAGGTTGAGAGGCAGAGTTCATACCTTGTGGGAATGGGTTCTTCGGAAATGGCCTTCGGATTGTATTATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7961.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis