Browse Element(s) Details


Os.7982.1.S1_at

Description gb:AK061730.1
DB_XREF= gi:32971748
TID=Os.7982.1
CNT=28
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7982 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative leucine-rich repeat protein (OSJNBa0051C19.5), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-038-C03, full insert sequence.
FL= gb:AK061730.1 gb:AK069710.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3258010/11BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g32540OsAffx.14902.1.A1_at4/113+18566095..18567975retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g32550Os.1709.1.S1_x_at11/113+18570532..18572832retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g32560Os.54287.1.S1_at6/113+18573417..18576957hypothetical protein
LOC_Os03g32560OsAffx.27653.1.S1_x_at2/113+18573417..18576957hypothetical protein
LOC_Os03g32570OsAffx.25341.1.S1_at11/113+18579201..18580260hypothetical protein
LOC_Os03g32580Os.7982.1.S1_at10/113+18590819..18593412BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os03g32590Os.50304.1.S1_x_at11/113+18593422..18602509Transcription initiation factor TFIID component TAF4 family protein, expressed
LOC_Os03g32590Os.50304.1.S2_at11/113+18593422..18602509Transcription initiation factor TFIID component TAF4 family protein, expressed
LOC_Os03g32590Os.50304.2.S1_at11/113+18593422..18602509Transcription initiation factor TFIID component TAF4 family protein, expressed
LOC_Os03g32600NANA3+18607360..18615222retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g32610OsAffx.13160.1.S1_x_at11/113+18618168..18619139hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007165biological_processsignal transduction
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0005886cellular_componentplasma membrane
GO:0004672molecular_functionprotein kinase activity
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7982.1.S1_at--966--2691Chr03:18591986..18592009 (24 bp)
AAGCTCGGCTCGCTGAGATTCATGC
LOC_Os03g32580
Os.7982.1.S1_at--83--2891Chr03:18592397..18592421 (25 bp)
AAGGGAGCTGGCCAAACTATCCAAC
LOC_Os03g32580
Os.7982.1.S1_at--626--3171Chr03:18592537..18592561 (25 bp)
CAATGACCTCTGTGGAACTATTCCT
LOC_Os03g32580
Os.7982.1.S1_at--58--5471Chr03:18592551..18592575 (25 bp)
GAACTATTCCTGTTGACGGTCCCTT
LOC_Os03g32580
Os.7982.1.S1_at--815--10651NONE
TTCCCTCTTCGAAGCTTTGAGAACA
NONE
Os.7982.1.S1_at--466--9711Chr03:18593008..18593032 (25 bp)
TCAACGGCCCAGAGCTGCAAGGTTT
LOC_Os03g32580
Os.7982.1.S1_at--177--2151Chr03:18593081..18593105 (25 bp)
ACAGCAATGCATGTCGTCCGTTGAT
LOC_Os03g32580
Os.7982.1.S1_at--950--8671Chr03:18593154..18593178 (25 bp)
TGTGAGTTCACATATGCAGCAGAGC
LOC_Os03g32580
Os.7982.1.S1_at--198--3251Chr03:18593286..18593310 (25 bp)
CAAGCTGCTTTACTGCAGTCGTGTT
LOC_Os03g32580
Os.7982.1.S1_at--91--6331Chr03:18593318..18593342 (25 bp)
GATGCAAATCCTAGCGACACGAATT
LOC_Os03g32580
Os.7982.1.S1_at--1075--9871Chr03:18593347..18593371 (25 bp)
TACATATTGTACATTCTCCCAGTCC
LOC_Os03g32580
Target Sequence 
AAGCTCGGCTCGCTGAGATTCATGCGGTTGAACAATAACAAGCTTGCTGGATCAATTCCAAGGGAGCTGGCCAAACTATC
CAACCTGAAAGTCATTGACTTGTCTAACAATGACCTCTGTGGAACTATTCCTGTTGACGGTCCCTTCTCAACCTTCCCTC
TTCGAAGCTTTGAGAACAACAACAGGCTCAACGGCCCAGAGCTGCAAGGTTTGGTTCCTTATGACTTTGGATGTTAAGAG
CTCCATGTTGGTGAAGTAGCACAGCAATGCATGTCGTCCGTTGATAAATGGAAAAGAATATAGTAGTACAAATAGGAAAG
CTAGCATGTATGTTGTGAGTTCACATATGCAGCAGAGCTGCAGAGCTAAAGAGGGAAGGTTAATGTACCCAGGCAGCATG
AACAAAGAATGTATTCAGAGAAGTTTTACTTATATTCATGATACAGGTACTATGTATGTAAATTTCAAGCTGCTTTACTG
CAGTCGTGTTTTTAGGTGATGCAAATCCTAGCGACACGAATTAACGTACATATTGTACATTCTCCCAGTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7982.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis