Browse Element(s) Details


Os.7988.1.S1_s_at

Description gb:AF017362.1
DB_XREF= gi:2407278
TID=Os.7988.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7988 (NCBI UniGene Cluster)
DEF=Oryza sativa aldolase mRNA, complete cds.
PROD=aldolase
FL= gb:AF017362.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0702011/11Fructose-bisphosphate aldolase, chloroplast precursor, putative, expressed
LOC_Os03g381301/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g06980Os.27795.1.S1_at11/1111+3459814..3463905BURP domain containing protein, expressed
LOC_Os11g06990OsAffx.9335.2.S1_at11/1111+3468895..3473462expressed protein
LOC_Os11g06990Os.28346.1.S1_x_at4/1111+3468895..3473462expressed protein
LOC_Os11g06990Os.24157.1.A1_at2/1111+3468895..3473462expressed protein
LOC_Os11g06990OsAffx.2425.1.S1_at1/1111+3468895..3473462expressed protein
LOC_Os11g06990Os.46020.1.S1_at1/1111+3468895..3473462expressed protein
LOC_Os11g07000OsAffx.30851.1.S1_at11/1111+3478324..3479769hypothetical protein
LOC_Os11g07010OsAffx.18714.1.S1_at9/1111+3480295..3481145hypothetical protein
LOC_Os11g07020Os.18335.3.S1_x_at11/1111+3484456..3487557Fructose-bisphosphate aldolase, chloroplast precursor, putative, expressed
LOC_Os11g07020Os.7988.1.S1_s_at11/1111+3484456..3487557Fructose-bisphosphate aldolase, chloroplast precursor, putative, expressed
LOC_Os11g07030Os.24073.1.S1_at11/1111+3488365..3490311expressed protein
LOC_Os11g07040Os.5879.1.S1_at11/1111+3491121..3495877Calcium-dependent protein kinase, isoform AK1, putative, expressed
LOC_Os11g07050Os.49214.1.S1_at11/1111+3502731..3508683FHA domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006098biological_processpentose-phosphate shunt
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0004332molecular_functionfructose-bisphosphate aldolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7988.1.S1_s_at--1080--10571Chr11:3485659..3485683 (25 bp)
TTCTACATGGCCGAGAACAATGTGA
LOC_Os11g07020
Os.7988.1.S1_s_at--909--2451Chr11:3485644..3485668 (25 bp)
AACAATGTGATGTTCGAGGGCATCC
LOC_Os11g07020
Os.7988.1.S1_s_at--530--9712Chr11:3485616..3485640 (25 bp)
TCAAGCCAAGCATGGTGACACCCGG
LOC_Os11g07020
Os.7988.1.S1_s_at--728--2691Chr11:3485609..3485633 (25 bp)
AAGCATGGTGACACCCGGTGCCGAG
LOC_Os11g07020
Os.7988.1.S1_s_at--191--2171Chr11:3485599..3485623 (25 bp)
ACACCCGGTGCCGAGTGCAAGGACA
LOC_Os11g07020
Os.7988.1.S1_s_at--831--9171Chr11:3485591..3485615 (25 bp)
TGCCGAGTGCAAGGACAGGGCCACC
LOC_Os11g07020
Os.7988.1.S1_s_at--343--951Chr11:3485580..3485604 (25 bp)
AGGACAGGGCCACCCCTGAGCAAGT
LOC_Os11g07020
Os.7988.1.S1_s_at--472--7251Chr11:3485171..3485533 (25 bp)
GTCCCCGGCATCATGTTCTTGTCGG
LOC_Os11g07020
Os.7988.1.S1_s_at--232--4971Chr11:3485164..3485526 (25 bp)
GCATCATGTTCTTGTCGGGTGGGCA
LOC_Os11g07020
Os.7988.1.S1_s_at--964--411Chr11:3485162..3485524 (25 bp)
ATCATGTTCTTGTCGGGTGGGCAGT
LOC_Os11g07020
Os.7988.1.S1_s_at--775--9951Chr11:3485066..3485090 (25 bp)
TACGCGAGGGCGCTGCAGAACACGT
LOC_Os11g07020
Target Sequence 
TTCTACATGGCCGAGAACAATGTGATGTTCGAGGGCATCCTCCTCAAGCCAAGCATGGTGACACCCGGTGCCGAGTGCAA
GGACAGGGCCACCCCTGAGCAAGTATNTGACTACACCCTCAAGCTCCTCCACAGAAGGATCCCCCCTGCCGTCCCCGGCA
TCATGTTCTTGTCGGGTGGGCAGTCGGAGGTGGAGGCGACGCAGAACCTGAACGCGATGAACCAGGGGCCCAACCCGTGG
CACGTGTCGTTNTCGTACGCGAGGGCGCTGCAGAACACGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7988.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis