Browse Element(s) Details


Os.8007.1.S1_at

Description gb:AK119217.1
DB_XREF= gi:37988840
TID=Os.8007.1
CNT=61
FEA=FLmRNA
TIER=FL+Stack
STK=9
UG=Os.8007 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023107D12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-046-E10, full insert sequence.
FL= gb:AK061410.1 gb:AK100602.1 gb:AK119223.1 gb:AK119217.1 gb:AK120503.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1791011/11RuBisCO subunit binding-protein alpha subunit, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g17900Os.54189.1.S1_at11/1112+10278319..10284123armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os12g17910Os.8007.1.S1_at11/1112+10291015..10295321RuBisCO subunit binding-protein alpha subunit, chloroplast precursor, putative, expressed
LOC_Os12g17920OsAffx.32038.2.S1_at11/1112+10296940..10298139hypothetical protein
LOC_Os12g17920Os.24470.1.A1_at1/1112+10296940..10298139hypothetical protein
LOC_Os12g17930OsAffx.7627.1.S1_at11/1112+10299624..10303523hypothetical protein
LOC_Os12g17930OsAffx.23176.3.S1_x_at2/1112+10299624..10303523hypothetical protein
LOC_Os12g17930OsAffx.17424.1.S1_at1/1112+10299624..10303523hypothetical protein
LOC_Os12g17930Os.19061.2.S1_at1/1112+10299624..10303523hypothetical protein
LOC_Os12g17940OsAffx.31791.1.S1_at11/1112+10307836..10308297hypothetical protein
LOC_Os12g17950OsAffx.31792.1.S1_at11/1112+10318250..10319272hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0008219biological_processcell death
GO:0009627biological_processsystemic acquired resistance
GO:0009658biological_processchloroplast organization and biogenesis
GO:0009790biological_processembryonic development
GO:0051085biological_processchaperone cofactor dependent protein folding
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8007.1.S1_at--1029--6911Chr12:10294422..10294446 (25 bp)
GTATGTGCATCTTTCAACTACCGTC
LOC_Os12g17910
Os.8007.1.S1_at--747--9951Chr12:10294440..10294464 (25 bp)
TACCGTCCCTGCGATCAAAGAAACA
LOC_Os12g17910
Os.8007.1.S1_at--1150--5871Chr12:10294480..10294504 (25 bp)
GAGCGCCTTGGTGCAGACATTATTC
LOC_Os12g17910
Os.8007.1.S1_at--926--11Chr12:10294501..10294795 (25 bp)
ATTCAAAAGGCGTTGGTAGCTCCCG
LOC_Os12g17910
Os.8007.1.S1_at--359--3332Chr12:10294799..10294823 (25 bp)
CACTGATTGCCCACAATGCTGGAGT
LOC_Os12g17910
Os.8007.1.S1_at--160--6211Chr12:10294912..10294936 (25 bp)
GAGGCGGGTGTTATTGACCCAGCTA
LOC_Os12g17910
Os.8007.1.S1_at--701--9771Chr12:10294935..10294959 (25 bp)
TAAGGTGACGAGATGCGCGCTCCAG
LOC_Os12g17910
Os.8007.1.S1_at--117--9991Chr12:10294989..10295013 (25 bp)
TACCACACAGGCCATTGTTGTCGAG
LOC_Os12g17910
Os.8007.1.S1_at--158--4751Chr12:10295038..10295062 (25 bp)
GCTGAGCCGGCAGAGGGAACCCTTA
LOC_Os12g17910
Os.8007.1.S1_at--186--191Chr12:10295081..10295105 (25 bp)
ATTTCTTCAGGGTGGCTTTGTTTAG
LOC_Os12g17910
Os.8007.1.S1_at--504--2631Chr12:10295214..10295238 (25 bp)
AACCTGCCTGATCTGAACTCATATG
LOC_Os12g17910
Target Sequence 
GTATGTGCATCTTTCAACTACCGTCCCTGCGATCAAAGAAACAATCGAAGACCATGATGAGCGCCTTGGTGCAGACATTA
TTCAAAAGGCGTTGGTAGCTCCCGCTTCACTGATTGCCCACAATGCTGGAGTGGAAGGGGAAGTGGTAGTTGAGAAGATC
AAGGACGGCGAGTGGGAAGTCGGGTACAATGCGATGAACGACAAGTATGAGAACTTGATTGAGGCGGGTGTTATTGACCC
AGCTAAGGTGACGAGATGCGCGCTCCAGAATGCCGCCTCGGTGGCTGGAATGGTCCTTACCACACAGGCCATTGTTGTCG
AGAAGCCGAAGCCCAAGGCTCCTGTTGCTGAGCCGGCAGAGGGAACCCTTACCGTCTAAACAGTGGTGAATTTCTTCAGG
GTGGCTTTGTTTAGATGGTTCATACCAACTGAAATGGTAGAATTTTTGTCTGGGAGTTTTTGGTTCAGATCAACCGAAAG
GTCTAGTGTAGGATTGGTTTCCATTTTTGAGATTGAAGGTGCAACCTGCCTGATCTGAACTCATATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8007.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis