Browse Element(s) Details


Os.8008.1.S1_a_at

Description gb:AK070496.1
DB_XREF= gi:32980520
TID=Os.8008.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8008 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative serine peptidase (OSJNBa0055O03.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023054G22, full insert sequence.
FL= gb:AK070496.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3676011/11prolyl carboxypeptidase like protein, putative, expressed
LOC_Os02g324801/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g36720OsAffx.19542.3.S1_x_at10/1110+19326578..19330800retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g36729OsAffx.3688.1.S1_x_at1/1110+19335623..19339255hypothetical protein
LOC_Os10g36740OsAffx.30693.1.S1_at10/1110+19341853..19343977Cytochrome P450 family protein
LOC_Os10g36750Os.46646.1.S1_x_at11/1110+19346385..19347071hypothetical protein
LOC_Os10g36760Os.8008.1.S1_a_at11/1110+19347504..19352784prolyl carboxypeptidase like protein, putative, expressed
LOC_Os10g36770OsAffx.20203.1.S1_at7/1110+19353705..19354109hypothetical protein
LOC_Os10g36780Os.46474.2.S1_x_at11/1110+19357589..19362864prolyl carboxypeptidase like protein, putative, expressed
LOC_Os10g36780Os.46474.1.S1_at11/1110+19357589..19362864prolyl carboxypeptidase like protein, putative, expressed
LOC_Os10g36800Os.20602.2.S1_x_at11/1110+19370747..19372927hAT family dimerisation domain containing protein
LOC_Os10g36810Os.46787.1.S1_at11/1110+19374212..19383870Plus-3 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0005764cellular_componentlysosome
GO:0004185molecular_functionserine carboxypeptidase activity
GO:0008236molecular_functionserine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8008.1.S1_a_at--1148--5011Chr10:19351836..19351860 (25 bp)
GCAGTGATCTATCTGGATGCCCTCA
LOC_Os10g36760
Os.8008.1.S1_a_at--906--5711Chr10:19352094..19352118 (25 bp)
GACTCGTCTAATTGTTCATCTCCAG
LOC_Os10g36760
Os.8008.1.S1_a_at--41--2231Chr10:19352397..19352421 (25 bp)
ACAATGAGCCATTGCTGGGCAGTAG
LOC_Os10g36760
Os.8008.1.S1_a_at--553--5931Chr10:19352425..19352449 (25 bp)
GAGCATAGCTACTTACTGATTACCT
LOC_Os10g36760
Os.8008.1.S1_a_at--359--1971Chr10:19352439..19352463 (25 bp)
ACTGATTACCTGCTCGAGCTACCAA
LOC_Os10g36760
Os.8008.1.S1_a_at--825--7911Chr10:19352547..19352571 (25 bp)
GGTTGTTCCAAGCATTCTCATGGTA
LOC_Os10g36760
Os.8008.1.S1_a_at--324--7851Chr10:19352568..19352592 (25 bp)
GGTACCAAGCATTATCCTCAGGACT
LOC_Os10g36760
Os.8008.1.S1_a_at--54--5731Chr10:19352589..19352613 (25 bp)
GACTGCGGTAACAATTGCTCAAACA
LOC_Os10g36760
Os.8008.1.S1_a_at--946--7371Chr10:19352622..19352646 (25 bp)
GTGACGACCTCTGTCATTTGTCAAT
LOC_Os10g36760
Os.8008.1.S1_a_at--228--9791Chr10:19352646..19352670 (25 bp)
TAACCTTACAGGTTGCTCTCAGGCT
LOC_Os10g36760
Os.8008.1.S1_a_at--101--10032Chr10:19352760..19352784 (25 bp)
TAGATAACCGGGTACATCCTACTCC
LOC_Os10g36760
Target Sequence 
GCAGTGATCTATCTGGATGCCCTCAAGCTCCTTCACATATTGAAGGTGACTCGTCTAATTGTTCATCTCCAGAAGCTGTG
AACAAAGTAAGAAAGCAGATCGTCGATCACATTGATTTATGGTTATCAGAATGTCAAGAGCAAGGACACGACAATGAGCC
ATTGCTGGGCAGTAGATGGAGCATAGCTACTTACTGATTACCTGCTCGAGCTACCAACCATATGTTCAAAAGGCCATGAG
TACAAGACAATGCAGCTGTCATTTAGACTAGTATGATTCACTCAAATAATACGGACAGTTGGTTGTTCCAAGCATTCTCA
TGGTACCAAGCATTATCCTCAGGACTGCGGTAACAATTGCTCAAACACTACTATGGTGACGACCTCTGTCATTTGTCAAT
AACCTTACAGGTTGCTCTCAGGCTCCCCCATTCTGCAGAAGATTACCATGATATGTAAAATGTTACTGAATTATGTACAA
GATAAACTTTGTTTATTCATGAGACTAAGATATTAGATAACCGGGTACATCCTACTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8008.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis