Browse Element(s) Details


Os.8032.1.S2_at

Description gb:D90407.1
DB_XREF= gi:218182
TID=Os.8032.1
CNT=81
FEA=FLmRNA
TIER=FL+Stack
STK=14
UG=Os.8032 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) mRNA for oryzain beta, complete cds
DEF=Oryza sativa (japonica cultivar-group) mRNA for oryzain beta, complete cds.
FL= gb:AK099358.1 gb:D90407.1 gb:AK109371.2 gb:AK073373.1 gb:AK107749.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5744011/11Cysteine protease 1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g57370Os.22450.1.S1_at11/114+33929122..33931657Phospholipase/Carboxylesterase family protein, expressed
LOC_Os04g57380Os.57028.1.S1_at11/114+33931853..33933371Phospholipase/Carboxylesterase family protein, expressed
LOC_Os04g57390OsAffx.14457.1.S1_at11/114+33934285..33935850Phospholipase/Carboxylesterase family protein, expressed
LOC_Os04g57400Os.5851.1.S1_at11/114+33936430..339396275-methylthioribose kinase family protein, expressed
LOC_Os04g57410Os.5851.1.S1_at4/114+33942669..339453015-methylthioribose kinase family protein
LOC_Os04g57420Os.48312.1.S1_at11/114+33947430..33950345Reticulon family protein, expressed
LOC_Os04g57420Os.56185.1.S1_at1/114+33947430..33950345Reticulon family protein, expressed
LOC_Os04g57420Os.56185.1.S1_x_at1/114+33947430..33950345Reticulon family protein, expressed
LOC_Os04g57430Os.15377.1.A1_at7/114+33952558..33954118Leucine Rich Repeat family protein, expressed
LOC_Os04g57440Os.8032.1.S1_at11/114+33954276..33957672Cysteine protease 1 precursor, putative, expressed
LOC_Os04g57440Os.8032.1.S2_at11/114+33954276..33957672Cysteine protease 1 precursor, putative, expressed
LOC_Os04g57450NANA4+33959729..33963324retrotransposon protein, putative, unclassified
LOC_Os04g57460NANA4+33963645..33969798retrotransposon protein, putative, unclassified
LOC_Os04g57470Os.40360.1.S1_x_at1/114+33975806..33976564hypothetical protein
LOC_Os04g57480Os.51843.1.S1_x_at11/114+33981997..33986622OTU-like cysteine protease family protein, expressed
LOC_Os04g57480Os.51843.1.S1_at11/114+33981997..33986622OTU-like cysteine protease family protein, expressed
LOC_Os04g57480Os.51843.2.S1_at1/114+33981997..33986622OTU-like cysteine protease family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0009414biological_processresponse to water deprivation
GO:0008234molecular_functioncysteine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8032.1.S2_at--784--7171Chr04:33955091..33955115 (25 bp)
GTCTGCGATGATAACTTCTCTTGCC
LOC_Os04g57440
Os.8032.1.S2_at--441--111Chr04:33955041..33955065 (25 bp)
ATTCGGCTTCAGGAATCTCTGCTTG
LOC_Os04g57440
Os.8032.1.S2_at--717--5171Chr04:33954597..33954621 (25 bp)
GCAAGAACAGCCCATTGAGCGTGAA
LOC_Os04g57440
Os.8032.1.S2_at--283--9011Chr04:33954576..33954600 (25 bp)
TGAAGGCTTTGAAGCGCACGCTCGC
LOC_Os04g57440
Os.8032.1.S2_at--956--4791Chr04:33954557..33954581 (25 bp)
GCTCGCTAAGCTGAACACCGCATGA
LOC_Os04g57440
Os.8032.1.S2_at--542--5071Chr04:33954492..33954516 (25 bp)
GCAGCGTGGAGCCTTTCTGAAATTT
LOC_Os04g57440
Os.8032.1.S2_at--895--10571Chr04:33954478..33954502 (25 bp)
TTCTGAAATTTCTGCTTCCGTGCCT
LOC_Os04g57440
Os.8032.1.S2_at--627--4471Chr04:33954457..33954481 (25 bp)
GCCTCCATATATCGTTGTCGCATTT
LOC_Os04g57440
Os.8032.1.S2_at--342--5651Chr04:33954426..33954450 (25 bp)
GACAGCTTATTTACTCTACTGCCTG
LOC_Os04g57440
Os.8032.1.S2_at--560--4471Chr04:33954406..33954430 (25 bp)
GCCTGCCTTTTATCTTACAGTGATC
LOC_Os04g57440
Os.8032.1.S2_at--482--8671Chr04:33954381..33954405 (25 bp)
TGTGTACATAGCTCGATCCAATTTG
LOC_Os04g57440
Target Sequence 
GTCTGCGATGATAACTTCTCTTGCCCAGCGGGCAGCACCTGCTGCTGCGCATTCGGCTTCAGGAATCTCTGCTTGGTTTG
GGGCTGTTGCCCAGTTGAAGGTGCAACCTGCTGCAAGGATCATGCCAGCTGCTGCCCGCCTGACTACCCTGTCTGCAACA
CCCGGGCTGGAACCTGCTCAGCGAGCAAGAACAGCCCATTGAGCGTGAAGGCTTTGAAGCGCACGCTCGCTAAGCTGAAC
ACCGCATGAGCTCATCGATAACATGTAATCGGCGAGGAGAGGGGATGAGGCAGCGTGGAGCCTTTCTGAAATTTCTGCTT
CCGTGCCTCCATATATCGTTGTCGCATTTTGAGGGGACAGCTTATTTACTCTACTGCCTGCCTTTTATCTTACAGTGATC
TGTGTACATAGCTCGATCCAATTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8032.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis