Browse Element(s) Details


Os.8069.1.S1_at

Description gb:AK066460.1
DB_XREF= gi:32976478
TID=Os.8069.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8069 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013068O04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013068O04, full insert sequence.
FL= gb:AK066460.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2712011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g27090OsAffx.21755.1.S1_x_at1/117+15703068..15703964hypothetical protein
LOC_Os07g27100OsAffx.22351.1.S1_at11/117+15711361..15711660hypothetical protein
LOC_Os07g27110Os.37197.1.S1_at11/117+15716642..15721424RNA recognition motif family protein, expressed
LOC_Os07g27120Os.8069.1.S1_at11/117+15724593..15728423expressed protein
LOC_Os07g27120Os.35374.1.S1_x_at10/117+15724593..15728423expressed protein
LOC_Os07g27130Os.45967.1.A1_at1/117+15728576..15729518hypothetical protein
LOC_Os07g27140Os.46440.1.A1_s_at11/117+15731085..15743951AT hook motif family protein
LOC_Os07g27140Os.27347.1.S1_a_at11/117+15731085..15743951AT hook motif family protein
LOC_Os07g27140Os.27347.3.S1_at10/117+15731085..15743951AT hook motif family protein
LOC_Os07g27140Os.36388.1.S1_at1/117+15731085..15743951AT hook motif family protein
LOC_Os07g27150Os.16878.1.S1_at11/117+15749432..15754093Trafficking protein particle complex subunit 4, putative, expressed
LOC_Os07g27150OsAffx.8670.1.S1_at4/117+15749432..15754093Trafficking protein particle complex subunit 4, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8069.1.S1_at--660--4411Chr07:15727791..15727815 (25 bp)
GCCATAGTTCCTTTTAGGGTTGCTA
LOC_Os07g27120
Os.8069.1.S1_at--619--6671Chr07:15727809..15727833 (25 bp)
GTTGCTAACTTACTTGCCATTTTAC
LOC_Os07g27120
Os.8069.1.S1_at--605--4431Chr07:15727824..15727848 (25 bp)
GCCATTTTACCCCACGTTATATATG
LOC_Os07g27120
Os.8069.1.S1_at--1119--7071Chr07:15727871..15727895 (25 bp)
GTCAATCGAGGTCATTCCAGTTCAG
LOC_Os07g27120
Os.8069.1.S1_at--747--2231Chr07:15727906..15727930 (25 bp)
ACAATTTCTTTGCTATCCATTCATG
LOC_Os07g27120
Os.8069.1.S1_at--81--2391Chr07:15727968..15727992 (25 bp)
AAACGATTGCACCACAAACCACTTT
LOC_Os07g27120
Os.8069.1.S1_at--1125--6631Chr07:15728005..15728029 (25 bp)
GTTGTACCTACTACATCTCATATTG
LOC_Os07g27120
Os.8069.1.S1_at--793--7711Chr07:15728148..15728172 (25 bp)
GGGTGAGCTTACAAGACTGATCATT
LOC_Os07g27120
Os.8069.1.S1_at--483--6431Chr07:15728166..15728190 (25 bp)
GATCATTGTTAGTCTTCAGCTGGAA
LOC_Os07g27120
Os.8069.1.S1_at--165--3191Chr07:15728233..15728257 (25 bp)
CAATTTCGTTGCCTCTTGTTTGAAG
LOC_Os07g27120
Os.8069.1.S1_at--856--211Chr07:15728337..15728361 (25 bp)
ATTTGTACCTATCTGTTTTGCCTAG
LOC_Os07g27120
Target Sequence 
GCCATAGTTCCTTTTAGGGTTGCTAACTTACTTGCCATTTTACCCCACGTTATATATGATGTATTGTTTGGCAGGAGAAC
GTCAATCGAGGTCATTCCAGTTCAGAAAGAAAAATACAATTTCTTTGCTATCCATTCATGAAGAATTGTACATTACAGAG
TTTTAAAGTAAATTGAAAAACGATTGCACCACAAACCACTTTTTATTTAAATTTGTTGTACCTACTACATCTCATATTGT
TAAATGTCAGGTCAACATACTGGGGATATATACATGACAAAAGAACAGAGCAAACTCCTTTTTTATCCAANTCATTGTTC
ACTGAAGTGGAGTTGTTTCTCAGAGACCTCACTAATAGGGTGAGCTTACAAGACTGATCATTGTTAGTCTTCAGCTGGAA
ACCAAGCAAAAGATGTCATACTGTTGTAACCATGTTTGAAGACAATTTCGTTGCCTCTTGTTTGAAGATGGCANTTGTCA
TAATGCGTGGTTTGTCAAAAATATGTCCNCTGTGACATGCGTATATGTATTAATAATTTGTCAGTTATTTGTACCTATCT
GTTTTGCCTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8069.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis