Browse Element(s) Details


Os.8111.1.S1_at

Description gb:AK066877.1
DB_XREF= gi:32976895
TID=Os.8111.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8111 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Unknown protein (OJ1217B09.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013087C18, full insert sequence.
FL= gb:AK066877.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0897011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g08950Os.20602.2.S1_x_at11/113+4625814..4627994hAT family dimerisation domain containing protein
LOC_Os03g08960Os.38013.2.S1_x_at11/113+4632047..4633905Homeobox domain containing protein, expressed
LOC_Os03g08960Os.38013.1.S1_a_at11/113+4632047..4633905Homeobox domain containing protein, expressed
LOC_Os03g08970Os.8111.1.S1_at11/113+4639974..4641187expressed protein
LOC_Os03g08980Os.9479.1.S1_at11/113+4644428..4646061expressed protein
LOC_Os03g08999Os.11584.1.S1_at11/113+4646378..4659082oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os03g08999Os.11584.1.S1_s_at11/113+4646378..4659082oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os03g08999OsAffx.25023.1.S1_at11/113+4646378..4659082oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os03g08999Os.11584.2.S1_x_at10/113+4646378..4659082oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os03g08999OsAffx.15844.1.S1_at1/113+4646378..4659082oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os03g09020Os.19283.1.S1_s_at11/113+4661471..4664413oxidoreductase, zinc-binding dehydrogenase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8111.1.S1_at--430--451Chr03:4640619..4640643 (25 bp)
ATCTCTTCCATTCCAAGACCATGAA
LOC_Os03g08970
Os.8111.1.S1_at--898--2751Chr03:4640648..4640672 (25 bp)
AAGACGGCGCACAAGTGGGTATTTT
LOC_Os03g08970
Os.8111.1.S1_at--941--10351Chr03:4640669..4640693 (25 bp)
TTTTTCTGATCAAACGTTGCCGCCA
LOC_Os03g08970
Os.8111.1.S1_at--473--7971Chr03:4640709..4640733 (25 bp)
GGATCGTAAATTCCATGCTTGGTTG
LOC_Os03g08970
Os.8111.1.S1_at--1026--631Chr03:4640723..4640747 (25 bp)
ATGCTTGGTTGTTATTCTTGCCTAC
LOC_Os03g08970
Os.8111.1.S1_at--460--7591Chr03:4640770..4640794 (25 bp)
GGGCTTTCACTCTAAACTATTCTCA
LOC_Os03g08970
Os.8111.1.S1_at--343--10851Chr03:4640848..4640872 (25 bp)
TTGGGATCCTGTATGTATACGAGCA
LOC_Os03g08970
Os.8111.1.S1_at--481--7931Chr03:4640923..4640947 (25 bp)
GGATTGCAAATCGTTACTCTGTAAA
LOC_Os03g08970
Os.8111.1.S1_at--125--931Chr03:4640990..4641014 (25 bp)
AGGCATCTGTACAGTATCTTGTATA
LOC_Os03g08970
Os.8111.1.S1_at--758--6831Chr03:4641028..4641052 (25 bp)
GTTTCATTTCTCGAATTCATGCATG
LOC_Os03g08970
Os.8111.1.S1_at--595--4331Chr03:4641108..4641132 (25 bp)
CCAGTTGTACTGCTCGTTAATTTAA
LOC_Os03g08970
Target Sequence 
ATCTCTTCCATTCCAAGACCATGAAGGAGAAGACGGCGCACAAGTGGGTATTTTTCTGATCAAACGTTGCCGCCACCGCA
TGCAAACTATGGATCGTAAATTCCATGCTTGGTTGTTATTCTTGCCTACCTTTTTTTTTAAAATTTTTAGGGGGCTTTCA
CTCTAAACTATTCTCAAGTATTTTTGTGTTTGATTTTGACTTTTTTTNNAAAAAAAAACNAGAAGAATTTTGGGATCCTG
TATGTATACGAGCAGAAGTTTATAATTATTAACCTGTCAATGATTTGTACTTGACCACAACNGGGGGATTGCAAATCGTT
ACTCTGTAAAGCTAGAAAAATATAAGGAGACAGTGTATACGGGTGTAAAATTAGGCATCTGTACAGTATCTTGTATAGTT
TCAATTATAAGTTTCATTTCTCGAATTCATGCATGATCTTATAGTTTTGACTATTTAATTTGCTNATTTGTATGTAGAAA
TCACAATTTTCCAGTTGTACTGCTCGTTAATTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8111.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis