Browse Element(s) Details


Os.8152.1.S1_at

Description gb:AB015972.1
DB_XREF= gi:18146759
GEN=OsRan2
TID=Os.8152.1
CNT=101
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8152 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) OsRan2 mRNA for small GTP-binding protein (Ran2), complete cds.
PROD=small GTP-binding protein (Ran2)
FL= gb:AB015287.1 gb:AK098889.1 gb:AK121699.1 gb:AK061714.1 gb:AB015972.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4989011/11GTP-binding nuclear protein Ran/TC4, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g49830OsAffx.27387.2.S1_at11/115+28514304..28515613Lipase family protein, expressed
LOC_Os05g49840Os.54760.1.S1_at9/115+28515675..28519994Lipase family protein, expressed
LOC_Os05g49850OsAffx.10048.1.S1_x_at1/115+28522656..28526918retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os05g49860OsAffx.10929.1.S1_x_at2/115+28528717..28529506Histone H2B, putative, expressed
LOC_Os05g49870NANA5+28530478..28533304retrotransposon protein, putative, unclassified
LOC_Os05g49880Os.11139.1.S1_at11/115+28534384..28538305Malate dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os05g49890Os.8152.1.S1_at11/115+28539165..28541469GTP-binding nuclear protein Ran/TC4, putative, expressed
LOC_Os05g49900Os.53085.1.S1_at11/115+28541952..28544278Fatty acid elongase, putative, expressed
LOC_Os05g49910Os.57367.1.S1_x_at11/115+28545588..28548920expressed protein
LOC_Os05g49910Os.57367.1.S1_at11/115+28545588..28548920expressed protein
LOC_Os05g49910Os.20347.1.S1_at8/115+28545588..28548920expressed protein
LOC_Os05g49920OsAffx.27388.1.S1_at11/115+28549790..28552533pentatricopeptide, putative, expressed
LOC_Os05g49930Os.47898.1.A1_at11/115+28557003..28558717GRAS family transcription factor containing protein, expressed
LOC_Os05g49940Os.27218.1.A1_at11/115+28564193..28564952expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006606biological_processprotein import into nucleus
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0003924molecular_functionGTPase activity
GO:0005515molecular_functionprotein binding
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8152.1.S1_at--95--3251Chr05:28540365..28540389 (25 bp)
CAACTGTGGTAAGATCCGCTTCTAC
LOC_Os05g49890
Os.8152.1.S1_at--405--3231Chr05:28539929..28539953 (25 bp)
CAAGCAGGTCACATTCCACAGGAAG
LOC_Os05g49890
Os.8152.1.S1_at--370--5971Chr05:28539856..28539880 (25 bp)
GAGAAGCCCTTCCTTTATCTTGCAA
LOC_Os05g49890
Os.8152.1.S1_at--1101--931Chr05:28539725..28539856 (25 bp)
AGGAAGCTTGCTGGTGACCCGAACC
LOC_Os05g49890
Os.8152.1.S1_at--712--5811Chr05:28539710..28539734 (25 bp)
GACCCGAACCTGCATTTCGTTGAAG
LOC_Os05g49890
Os.8152.1.S1_at--1025--8791Chr05:28539684..28539708 (25 bp)
TGTTGCTCTTAAACCTCCGGAAGTT
LOC_Os05g49890
Os.8152.1.S1_at--366--3951Chr05:28539667..28539691 (25 bp)
CGGAAGTTCCCATTGACCTGGCAAT
LOC_Os05g49890
Os.8152.1.S1_at--895--691Chr05:28539457..28539481 (25 bp)
ATGAGTCTATCATGCTTCAGCCTGA
LOC_Os05g49890
Os.8152.1.S1_at--434--10531Chr05:28539442..28539466 (25 bp)
TTCAGCCTGAGTCTCTTCATAAGAG
LOC_Os05g49890
Os.8152.1.S1_at--244--151Chr05:28539412..28539436 (25 bp)
ATTAGGCCAATGCATGCTAGTGTTA
LOC_Os05g49890
Os.8152.1.S1_at--433--4871Chr05:28539397..28539421 (25 bp)
GCTAGTGTTAGCTTGTCTGTGGAAT
LOC_Os05g49890
Target Sequence 
CAACTGTGGTAAGATCCGCTTCTACTGCTGGGACACTGCTGGACAAGAGAAGTTTGGTGGACTTAGGGATGGATACTATA
TCCATGGTCAATGTGCGATAATTATGTTTGATGTCACTTCAAGGCTGACTTACAAGAATGTTCCAACATGGCATAGGGAC
TTGTGCAGGGTGTGTGAAAACATCCCCNNATTGTCCTGTGTGGTAACAAGGTTGATGTGAAGAACAGGCAGGTTAAAGCC
AAGCAGGTCACATTCCACAGGAAGAAGAATCTCCAGTACTATGAAATTTCTGCCAAGAGCAACTACAACTTTGAGAAGCC
CTTCCTTTATCTTGCAAGGAAGCTTGCTGGTGACCCGAACCTGCATTTCGTTGAAGCTGTTGCTCTTAAACCTCCGGAAG
TTCCCATTGACCTGGCAATGCAGCAACAGCATGAGGCTGAGCTTGCGGCTGCAGCAGCACAACCTCTCCCAGATGACGAT
GACGATCTGATCGAGTAGAGAGGATCATGAGTCTATCATGCTTCAGCCTGAGTCTCTTCATAAGAGTCTGAATTAGGCCA
ATGCATGCTAGTGTTAGCTTGTCTGTGGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8152.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis