Browse Element(s) Details


Os.8175.1.S1_at

Description gb:AK067310.1
DB_XREF= gi:32977328
TID=Os.8175.1
CNT=20
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.8175 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0519E12.32 (P0519E12.32), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013102E11, full insert sequence.
FL= gb:AK067310.1 gb:AK061698.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4399011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g43970Os.34315.1.S1_at11/117+26286279..26289370calmodulin-binding family protein, putative, expressed
LOC_Os07g43980Os.41098.1.S1_at11/117+26290499..26294460DEAD/DEAH box helicase family protein, expressed
LOC_Os07g43990Os.8175.1.S1_at11/117+26296631..26298846expressed protein
LOC_Os07g44000OsAffx.28894.1.S1_at11/117+26299652..26300601hypothetical protein
LOC_Os07g44010OsAffx.5630.1.S1_x_at11/117+26306253..26306835expressed protein
LOC_Os07g44020Os.41096.1.S1_at11/117+26307425..26309991DedA family protein, expressed
LOC_Os07g44030OsAffx.28966.1.S1_at11/117+26311499..26313157myb family transcription factor, putative
LOC_Os07g44040Os.20297.1.S1_at11/117+26319587..26322425Ras-related protein ARA-4, putative, expressed
LOC_Os07g44050Os.20864.1.A1_at11/117+26323397..26324948expressed protein
LOC_Os07g44050Os.20864.2.S1_at1/117+26323397..26324948expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0042175cellular_componentnuclear envelope-endoplasmic reticulum network
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8175.1.S1_at--1086--1571Chr07:26297201..26297225 (25 bp)
AGCTCAGGTCATACTTTCATGTGCA
LOC_Os07g43990
Os.8175.1.S1_at--501--771Chr07:26297183..26297207 (25 bp)
ATGTGCACTTGCTTGATGATTACAA
LOC_Os07g43990
Os.8175.1.S1_at--1132--871Chr07:26297100..26297124 (25 bp)
AGGCCAGTGCCGTTCGATGCATATA
LOC_Os07g43990
Os.8175.1.S1_at--439--9991Chr07:26296941..26296965 (25 bp)
TAGCGATGTCCATATACTCTTCCTT
LOC_Os07g43990
Os.8175.1.S1_at--13--4331Chr07:26296920..26296944 (25 bp)
CCTTGGCTGGCGCATTGGAATTCAG
LOC_Os07g43990
Os.8175.1.S1_at--72--10551Chr07:26296889..26296913 (25 bp)
TTCATCCAGGGTTTGTCATTAGGCA
LOC_Os07g43990
Os.8175.1.S1_at--1131--10471Chr07:26296857..26296881 (25 bp)
TTAATGTATTTCCTGCCGTACCATG
LOC_Os07g43990
Os.8175.1.S1_at--81--7291Chr07:26296802..26296826 (25 bp)
GTGCCATCCATTCTTTTTGTGTAAT
LOC_Os07g43990
Os.8175.1.S1_at--369--10451Chr07:26296742..26296766 (25 bp)
TTACTGGCCCCTTCGCAAAATGTTG
LOC_Os07g43990
Os.8175.1.S1_at--447--2291Chr07:26296725..26296749 (25 bp)
AAATGTTGCCATCTTTATTCCCTTG
LOC_Os07g43990
Os.8175.1.S1_at--770--8031Chr07:26296701..26296725 (25 bp)
GGAGTTAGCCGGGAACATCTGTTTT
LOC_Os07g43990
Target Sequence 
AGCTCAGGTCATACTTTCATGTGCACTTGCTTGATGATTACAAGGAGCTTTGGTCGAATACAAGTGAGTGGTACAATGAA
ACGACAACGCTAAGTGGTGGGAGGCCAGTGCCGTTCGATGCATATATGAGGGTGATTGTGGACACAGAGGTATTCTATAG
AGCAAAGACTCAAGTTGAAACTTTCAACAACTTGACGAGGGATTGCAAGGATGGAATCAATACATGCAACTTGTGACACA
TGAGTTCGTGTTGTGATAATTAGCGATGTCCATATACTCTTCCTTGGCTGGCGCATTGGAATTCAGAGGAACTTCATCCA
GGGTTTGTCATTAGGCATATCATCTTAATGTATTTCCTGCCGTACCATGTTCAATTCATTACACGTTGATCTGGATTATG
TGCCATCCATTCTTTTTGTGTAATTTATGTATTACTCTTGAGAAGTTTCTTGTAACTTGTTACTGGCCCCTTCGCAAAAT
GTTGCCATCTTTATTCCCTTGGAGTTAGCCGGGAACATCTGTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8175.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis