Browse Element(s) Details


Os.8188.1.S1_s_at

Description gb:AF491815.1
DB_XREF= gi:20067186
GEN=Usp1
TID=Os.8188.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8188 (NCBI UniGene Cluster)
DEF=Oryza sativa (indica cultivar-group) putative universal stress protein USP1 (Usp1) mRNA, complete cds.
PROD=putative universal stress protein USP1
FL= gb:AF491815.1 gb:AK064061.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4762011/11universal stress protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g47560NANA7+28442174..28442449hypothetical protein
LOC_Os07g47570Os.16072.1.S1_at2/117+28444286..28446432expressed protein
LOC_Os07g47580Os.10094.1.S1_at11/117+28446864..28449510TGF beta-inducible nuclear protein 1, putative, expressed
LOC_Os07g47590Os.26799.1.A1_at11/117+28451029..28454858heavy metal-induced putative protein 1, putative, expressed
LOC_Os07g47610OsAffx.29789.3.S1_x_at11/117+28460982..28466135hAT family dimerisation domain containing protein
LOC_Os07g47610OsAffx.29789.1.S1_x_at7/117+28460982..28466135hAT family dimerisation domain containing protein
LOC_Os07g47610OsAffx.31885.2.S1_x_at2/117+28460982..28466135hAT family dimerisation domain containing protein
LOC_Os07g47620Os.53572.1.S1_at11/117+28466708..28467888universal stress protein, putative, expressed
LOC_Os07g47620Os.8188.1.S1_s_at11/117+28466708..28467888universal stress protein, putative, expressed
LOC_Os07g47630Os.7106.1.S1_a_at11/117+28468085..28472460Pre-mRNA splicing factor SF2, putative, expressed
LOC_Os07g47640Os.10370.2.S1_x_at11/117+28472912..28473534Photosystem II reaction centre X protein containing protein, expressed
LOC_Os07g47640Os.10370.2.S1_at11/117+28472912..28473534Photosystem II reaction centre X protein containing protein, expressed
LOC_Os07g47650Os.53309.1.S1_at11/117+28474728..28478010Kelch motif family protein, expressed
LOC_Os07g47660OsAffx.28946.1.S1_at11/117+28478221..28478839expressed protein
LOC_Os07g47670Os.20501.1.S1_at11/117+28482570..28483508Hypoxia induced protein conserved region containing protein, expressed
LOC_Os07g47680NANA7+28484201..28484977transposon protein, putative, Pong sub-class
LOC_Os07g47690OsAffx.16753.1.S1_at11/117+28487115..28487633hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006950biological_processresponse to stress
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8188.1.S1_s_at--527--6091Chr07:28466955..28466979 (25 bp)
GAGTCAGAGCTATCTAACCAATCCA
LOC_Os07g47620
Os.8188.1.S1_s_at--441--1371Chr07:28466960..28466984 (25 bp)
AGAGCTATCTAACCAATCCATCCAT
LOC_Os07g47620
Os.8188.1.S1_s_at--914--1471Chr07:28466987..28467011 (25 bp)
AGCAATTGTTGATCCGTCTGTGAAT
LOC_Os07g47620
Os.8188.1.S1_s_at--601--6651Chr07:28466994..28467018 (25 bp)
GTTGATCCGTCTGTGAATTGTGATG
LOC_Os07g47620
Os.8188.1.S1_s_at--629--8111Chr07:28467066..28467090 (25 bp)
GGACGACAGCGAGCACAGCAACTAC
LOC_Os07g47620
Os.8188.1.S1_s_at--458--5151Chr07:28467083..28467107 (25 bp)
GCAACTACGCGCTGGAGTGGACGAT
LOC_Os07g47620
Os.8188.1.S1_s_at--206--2031Chr07:28467086..28467110 (25 bp)
ACTACGCGCTGGAGTGGACGATGCA
LOC_Os07g47620
Os.8188.1.S1_s_at--951--1091Chr07:28467098..28467122 (25 bp)
AGTGGACGATGCAGCACCTGGCGAG
LOC_Os07g47620
Os.8188.1.S1_s_at--871--5871Chr07:28467519..28467543 (25 bp)
GAGCCCAGGTACGTGCTGTGCAACG
LOC_Os07g47620
Os.8188.1.S1_s_at--406--8251Chr07:28467579..28467603 (25 bp)
GGCAGCCATGGCTACGGCGCAATCA
LOC_Os07g47620
Os.8188.1.S1_s_at--748--1971Chr07:28467652..28467676 (25 bp)
ACTGCTCCGTCATGATCGTCAAGCA
LOC_Os07g47620
Target Sequence 
GAGTCAGAGCTATCTAACCAATCCATCCATCGAGCAATTGTTGATCCGTCTGTGAATTGTGATGGCGGCGGCGGAGGGGG
AGCAGGGGAAGACGGTGGTGGTGGTCGGGGTGGACGACAGCGAGCACAGCAACTACGCGCTGGAGTGGACGATGCAGCAC
CTGGCGAGCGGCATGGCGGGCAGCGGCGGCGCCGAGCTCGTCATCGTCCACGCCAAGCCCTCGCCGTCCTCCGTCGTCGG
CTTCGGCGCCGGCCCCGGGTCTGGAGAGGTGGTGAGATACGTGGAGGCCGACCTGCGCAAGACGGCGGAGGATGTCGTCG
AGAAGGCGCGCCGCCTCTGCATCGCCAACGCGATGCACGCGTTGATCGAGGTGATCGAAGGGGAGCCCAGGTACGTGCTG
TGCAACGCGGTGGAGAAGCACAGCGCGGGGTTGCTCGTCGTCGGCAGCCATGGCTACGGCGCAATCAAGAGGGCCTTCCT
GGGGAGCGTCAGCGACTACTGCGCCCACCACGCGCACTGCTCCGTCATGATCGTCAAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8188.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis