Browse Element(s) Details


Os.8190.1.S1_at

Description gb:AK063860.1
DB_XREF= gi:32973878
TID=Os.8190.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8190 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0046E05.13 (P0046E05.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-122-D10, full insert sequence.
FL= gb:AK119318.1 gb:AK121525.1 gb:AK063860.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5473011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g54680Os.28943.1.S1_x_at1/111+31788870..31792095retrotransposon protein, putative, unclassified
LOC_Os01g54690NANA1+31793164..31798211retrotransposon protein, putative, unclassified
LOC_Os01g54700Os.51954.1.S1_at11/111+31800838..31804313transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g54700Os.32801.1.S1_x_at11/111+31800838..31804313transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g54714OsAffx.23790.1.S1_at11/111+31807618..31813573retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g54730Os.8190.2.S1_at11/111+31813962..31817016expressed protein
LOC_Os01g54730Os.8190.1.S1_at11/111+31813962..31817016expressed protein
LOC_Os01g54730Os.8190.2.S1_x_at10/111+31813962..31817016expressed protein
LOC_Os01g54730Os.8190.1.S2_at9/111+31813962..31817016expressed protein
LOC_Os01g54740OsAffx.21756.3.S1_x_at5/111+31824522..31824929transposon protein, putative, unclassified
LOC_Os01g54740OsAffx.21756.2.S1_x_at2/111+31824522..31824929transposon protein, putative, unclassified
LOC_Os01g54740OsAffx.21756.4.S1_x_at1/111+31824522..31824929transposon protein, putative, unclassified
LOC_Os01g54750NANA1+31829375..31829821hypothetical protein
LOC_Os01g54760OsAffx.16036.1.S1_x_at1/111+31830829..31833054hypothetical protein
LOC_Os01g54770OsAffx.23792.1.S1_at11/111+31835490..31836885hypothetical protein
LOC_Os01g54784Os.26431.1.A1_a_at11/111+31838384..31846443expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8190.1.S1_at--373--511Chr01:31816608..31816737 (25 bp)
ATCGTCCGCGAATTCCATATGCAGG
LOC_Os01g54730
Os.8190.1.S1_at--799--8191Chr01:31816559..31816583 (25 bp)
GGAAGTTTCTGTGAGTGCTGCCTCC
LOC_Os01g54730
Os.8190.1.S1_at--817--591Chr01:31816529..31816553 (25 bp)
ATGCCTCGAGACTGCGACCGGGAGA
LOC_Os01g54730
Os.8190.1.S1_at--204--5951Chr01:31816508..31816532 (25 bp)
GAGAAGGACTCTCCGTTCGGTTTGT
LOC_Os01g54730
Os.8190.1.S1_at--703--3871Chr01:31816436..31816460 (25 bp)
CTGTTGCGTGGGATCTGTTTGTTGA
LOC_Os01g54730
Os.8190.1.S1_at--464--5191Chr01:31816329..31816353 (25 bp)
GCAATGTTGTTTGTGCGTTCTTCAG
LOC_Os01g54730
Os.8190.1.S1_at--618--4231Chr01:31816291..31816315 (25 bp)
CCGTAGTTTGCTTGTCTCATTTATT
LOC_Os01g54730
Os.8190.1.S1_at--826--1531Chr01:31816234..31816258 (25 bp)
AGCATGTCGTTTCTCTAGTGTGGCC
LOC_Os01g54730
Os.8190.1.S1_at--1033--10051Chr01:31816219..31816243 (25 bp)
TAGTGTGGCCTACGTAGTACGTGCT
LOC_Os01g54730
Os.8190.1.S1_at--674--6991Chr01:31816203..31816227 (25 bp)
GTACGTGCTATTGGATTGGCTGAAT
LOC_Os01g54730
Os.8190.1.S1_at--360--10791Chr01:31816166..31816190 (25 bp)
TTGATAGCACCGATGCCCATGAGGC
LOC_Os01g54730
Target Sequence 
ATCGTCCGCGAATTCCATATGCAGGACGAGGACGCCGGCCGGCCGTACAGGAAGTTTCTGTGAGTGCTGCCTCCGGTGGA
TGCCTCGAGACTGCGACCGGGAGAAGGACTCTCCGTTCGGTTTGTTCTCCATACTGTTTTAATTGGACAGGGAGTATTTT
GGAGTGCTCAGACTGTTGCGTGGGATCTGTTTGTTGAATAAGCTGTCATGACTTGTTGTCTTTTCAATTGCTGAAATCTT
GGAGATTTTATTCGGTTAATTCGGCTGAATAACAGTGTTGCAATGTTGTTTGTGCGTTCTTCAGGTACTAATTAGAACCG
TAGTTTGCTTGTCTCATTTATTAAAATCTGAAATGGATTACAGTGAATGGTTTTAGCATGTCGTTTCTCTAGTGTGGCCT
ACGTAGTACGTGCTATTGGATTGGCTGAATAGATGCAGAAAATTGATAGCACCGATGCCCATGAGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8190.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis