Browse Element(s) Details


Os.8190.1.S2_at

Description gb:AK119318.1
DB_XREF= gi:37988941
TID=Os.8190.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8190 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0046E05.13 (P0046E05.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-130-H07, full insert sequence.
FL= gb:AK119318.1 gb:AK121525.1 gb:AK063860.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g547309/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g54680Os.28943.1.S1_x_at1/111+31788870..31792095retrotransposon protein, putative, unclassified
LOC_Os01g54690NANA1+31793164..31798211retrotransposon protein, putative, unclassified
LOC_Os01g54700Os.51954.1.S1_at11/111+31800838..31804313transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g54700Os.32801.1.S1_x_at11/111+31800838..31804313transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g54714OsAffx.23790.1.S1_at11/111+31807618..31813573retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g54730Os.8190.2.S1_at11/111+31813962..31817016expressed protein
LOC_Os01g54730Os.8190.1.S1_at11/111+31813962..31817016expressed protein
LOC_Os01g54730Os.8190.2.S1_x_at10/111+31813962..31817016expressed protein
LOC_Os01g54730Os.8190.1.S2_at9/111+31813962..31817016expressed protein
LOC_Os01g54740OsAffx.21756.3.S1_x_at5/111+31824522..31824929transposon protein, putative, unclassified
LOC_Os01g54740OsAffx.21756.2.S1_x_at2/111+31824522..31824929transposon protein, putative, unclassified
LOC_Os01g54740OsAffx.21756.4.S1_x_at1/111+31824522..31824929transposon protein, putative, unclassified
LOC_Os01g54750NANA1+31829375..31829821hypothetical protein
LOC_Os01g54760OsAffx.16036.1.S1_x_at1/111+31830829..31833054hypothetical protein
LOC_Os01g54770OsAffx.23792.1.S1_at11/111+31835490..31836885hypothetical protein
LOC_Os01g54784Os.26431.1.A1_a_at11/111+31838384..31846443expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
Os.8190.1.S2_at--307--4931Chr01:31814504..31814528 (25 bp)
GCTTGATCTTTAGTTGTCTCTTCGA
LOC_Os01g54730
Os.8190.1.S2_at--1149--1431Chr01:31814471..31814495 (25 bp)
AGAACCTTCATCATTCATGGGCTGC
LOC_Os01g54730
Os.8190.1.S2_at--422--6831Chr01:31814390..31814414 (25 bp)
GTTTACTCTTTCCTTCTGATGTTAC
LOC_Os01g54730
Os.8190.1.S2_at--533--271Chr01:31814300..31814324 (25 bp)
ATATGTCATCATAGTGGCACCCAAA
LOC_Os01g54730
Os.8190.1.S2_at--331--2451Chr01:31814249..31814273 (25 bp)
AAAATCCTGAATCTCTCTCTCATAG
LOC_Os01g54730
Os.8190.1.S2_at--408--9991Chr01:31814227..31814251 (25 bp)
TAGCTACGACTGACGAACTTCCGAG
LOC_Os01g54730
Os.8190.1.S2_at--325--2111Chr01:31814194..31814218 (25 bp)
ACATGAGCGGACACGTTGTTTCTGA
LOC_Os01g54730
Os.8190.1.S2_at--696--51Chr01:31814156..31814180 (25 bp)
ATTGCTGGCCATACTTGTCTAGTGA
LOC_Os01g54730
Os.8190.1.S2_at--563--6151NONE
GAGGTCAGCCTCATTCTGTGTATTA
NONE
Os.8190.1.S2_at--263--251Chr01:31814050..31814074 (25 bp)
ATATCATTGGCTCGCAAGTGCTCTG
LOC_Os01g54730
Os.8190.1.S2_at--586--7271NONE
GTCCACCTGGTTAATGCTACACTTG
NONE
Target Sequence
GCTTGATCTTTAGTTGTCTCTTCGAAGTTCTTAAGAACCTTCATCATTCATGGGCTGCCTCCTTTATTTTGTTCTGAGCT
TCTAAAATGGAATTAACATAACTGATGTGGCTGGGTTTACTCTTTCCTTCTGATGTTACATGCGGTTCTTATGCTTAGTA
CCAAATAATCACATAAATTGCTTTTGACATGTCAGTCTAGGTTGATATGTCATCATAGTGGCACCCAAATGAAAATAAAA
TCTGCCTCATATGTCAAAATCCTGAATCTCTCTCTCATAGCTACGACTGACGAACTTCCGAGCAGAAAAAACATGAGCGG
ACACGTTGTTTCTGAATATTGCAGGTTGATTGCTGGCCATACTTGTCTAGTGATGAATGGTGATACAAGTATCGAAGCCA
CTGCCCAGAAAAAAACAGAGGTCAGCCTCATTCTGTGTATTAAGCTGTCAACCTATATCATTGGCTCGCAAGTGCTCTGC
CGGTATCTGACCAGGTCCACCTGGTTAATGCTACACTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8190.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis