Browse Element(s) Details


Os.8190.2.S1_x_at

Description gb:NM_191239.1
DB_XREF= gi:34909561
GEN=P0046E05.13
TID=Os.8190.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.8190 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0046E05.13 (P0046E05.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0046E05.13 (P0046E05.13), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5473010/11expressed protein
LOC_Os01g531402/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g54680Os.28943.1.S1_x_at1/111+31788870..31792095retrotransposon protein, putative, unclassified
LOC_Os01g54690NANA1+31793164..31798211retrotransposon protein, putative, unclassified
LOC_Os01g54700Os.51954.1.S1_at11/111+31800838..31804313transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g54700Os.32801.1.S1_x_at11/111+31800838..31804313transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g54714OsAffx.23790.1.S1_at11/111+31807618..31813573retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g54730Os.8190.2.S1_at11/111+31813962..31817016expressed protein
LOC_Os01g54730Os.8190.1.S1_at11/111+31813962..31817016expressed protein
LOC_Os01g54730Os.8190.2.S1_x_at10/111+31813962..31817016expressed protein
LOC_Os01g54730Os.8190.1.S2_at9/111+31813962..31817016expressed protein
LOC_Os01g54740OsAffx.21756.3.S1_x_at5/111+31824522..31824929transposon protein, putative, unclassified
LOC_Os01g54740OsAffx.21756.2.S1_x_at2/111+31824522..31824929transposon protein, putative, unclassified
LOC_Os01g54740OsAffx.21756.4.S1_x_at1/111+31824522..31824929transposon protein, putative, unclassified
LOC_Os01g54750NANA1+31829375..31829821hypothetical protein
LOC_Os01g54760OsAffx.16036.1.S1_x_at1/111+31830829..31833054hypothetical protein
LOC_Os01g54770OsAffx.23792.1.S1_at11/111+31835490..31836885hypothetical protein
LOC_Os01g54784Os.26431.1.A1_a_at11/111+31838384..31846443expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8190.2.S1_x_at--118--2611Chr01:31816818..31816842 (25 bp)
AACGCAGGCCGCGAGAACCTCGAGT
LOC_Os01g54730
Os.8190.2.S1_x_at--478--5972Chr01:30860769..30860793 (25 bp)
GAGAACCTCGAGTTCAACTTCCGCT
LOC_Os01g53140
Os.8190.2.S1_x_at--396--2632Chr01:30860772..30860796 (25 bp)
AACCTCGAGTTCAACTTCCGCTGGA
LOC_Os01g53140
Os.8190.2.S1_x_at--623--9371Chr01:31816799..31816823 (25 bp)
TCGAGTTCAACTTCCGCTGGACCCG
LOC_Os01g54730
Os.8190.2.S1_x_at--732--9511Chr01:31816724..31816748 (25 bp)
TCTACAAGGGCATCGTCCGCGAATT
LOC_Os01g54730
Os.8190.2.S1_x_at--829--3211Chr01:31816720..31816744 (25 bp)
CAAGGGCATCGTCCGCGAATTCGTA
LOC_Os01g54730
Os.8190.2.S1_x_at--584--491Chr01:31816713..31816737 (25 bp)
ATCGTCCGCGAATTCGTAATCCCCT
LOC_Os01g54730
Os.8190.2.S1_x_at--1047--10111Chr01:31816664..31816688 (25 bp)
TTGCCGTGCCCTCTTGGGTTATCCA
LOC_Os01g54730
Os.8190.2.S1_x_at--253--10851Chr01:31816606..31816675 (25 bp)
TTGGGTTATCCAGCATATGCAGGAC
LOC_Os01g54730
Os.8190.2.S1_x_at--1000--7871Chr01:31816603..31816672 (25 bp)
GGTTATCCAGCATATGCAGGACGAG
LOC_Os01g54730
Os.8190.2.S1_x_at--424--10131NONE
TATCCAGCATATGCAGGACGAGGAC
NONE
Target Sequence 
AACGCAGGCCGCGAGAACCTCGAGTTCAACTTCCGCTGGACCCGCCGCAGCCTCGCCGTCGTCGGCCTCTTCGGACTCGC
CGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCGTAATCCCCTCCTCCGAACCCCCCCTCCTCTTCCTTGCCG
TGCCCTCTTGGGTTATCCAGCATATGCAGGACGAGGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8190.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis