Browse Element(s) Details


Os.8195.1.S1_at

Description gb:AU165131
DB_XREF= gi:11414338
DB_XREF=AU165131
CLONE=Osjc13
TID=Os.8195.1
CNT=14
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.8195 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5070011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g50660NANA2+30937667..30942731transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g50670NANA2+30948809..30949546hypothetical protein
LOC_Os02g50680Os.27853.1.S1_at11/112+30952740..30959353AAA-type ATPase family protein, putative, expressed
LOC_Os02g50680OsAffx.16376.1.S1_at1/112+30952740..30959353AAA-type ATPase family protein, putative, expressed
LOC_Os02g50690Os.23154.2.S1_at11/112+30959796..30961727GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g50690Os.23154.1.S1_at11/112+30959796..30961727GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g50700Os.8195.1.S1_at11/112+30965708..30967020expressed protein
LOC_Os02g50700OsAffx.24816.1.S1_at10/112+30965708..30967020expressed protein
LOC_Os02g50710Os.55360.1.S1_at11/112+30968359..30968912expressed protein
LOC_Os02g50720NANA2+30970448..30970759transposon protein, putative, unclassified
LOC_Os02g50730Os.52263.1.S1_at11/112+30975126..30976448Matrixin family protein, expressed
LOC_Os02g50740Os.55424.2.S1_at11/112+30981155..30982534transducin family protein, putative, expressed
LOC_Os02g50750OsAffx.3029.1.S1_at9/112+30983439..30985164hypothetical protein
LOC_Os02g50760Os.49471.1.S1_at11/112+30988505..30992992Chaperone protein dnaJ 16, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8195.1.S1_at--297--8991Chr02:30965994..30966018 (25 bp)
TGAAGAGGTTACTTGTTCGTGGGCT
LOC_Os02g50700
Os.8195.1.S1_at--625--6711Chr02:30966008..30966032 (25 bp)
GTTCGTGGGCTGTTTTCTTCTCCAT
LOC_Os02g50700
Os.8195.1.S1_at--686--10491Chr02:30966652..30966676 (25 bp)
TTAAGTGGCTAGTGCTCAATTATAC
LOC_Os02g50700
Os.8195.1.S1_at--329--331Chr02:30966673..30966697 (25 bp)
ATACTCCATCTTGTAGCTTCAGACT
LOC_Os02g50700
Os.8195.1.S1_at--43--1411Chr02:30966693..30966717 (25 bp)
AGACTTCAGTGATGGCCTCTGTCAA
LOC_Os02g50700
Os.8195.1.S1_at--324--6211Chr02:30966703..30966727 (25 bp)
GATGGCCTCTGTCAAAAGTCCTAGA
LOC_Os02g50700
Os.8195.1.S1_at--1150--5411Chr02:30966726..30966750 (25 bp)
GAACCTGCAGATTGTCCAGTACTAC
LOC_Os02g50700
Os.8195.1.S1_at--570--4351Chr02:30966741..30966765 (25 bp)
CCAGTACTACTAGGCTTGGCATGTA
LOC_Os02g50700
Os.8195.1.S1_at--394--6891Chr02:30966773..30966797 (25 bp)
GTATATGTTGTTTGTTTCCTCCTGT
LOC_Os02g50700
Os.8195.1.S1_at--184--6851Chr02:30966786..30966810 (25 bp)
GTTTCCTCCTGTTCAATGATCTGTT
LOC_Os02g50700
Os.8195.1.S1_at--1045--8971Chr02:30966845..30966869 (25 bp)
TGAACTTTTGATGCCACTACTTGTC
LOC_Os02g50700
Target Sequence 
TGAAGAGGTTACTTGTTCGTGGGCTGTTTTCTTCTCCATCCAGGGGTTTGTTGGGCAAATCTCCTGTCAGGCCTGCACTT
TGCAACGATGCTCTTCTCTCCAGGTTCCTCTCAACGGGGAAAGATGAGAACACAGTGACCGAAATCGGAGAGAAGGCAAG
ATCAACAGCGGAACAATTCCTCAAGGTGGCCAAGGAGAAGACTGACGAGGTAAGCGAGAAAACAAAGGAAACGATGCACG
AAACAAAGGAAGCAGTGGTCGGGGAGTCAGATGACGAGAAGGAGAAGTTCAAGCAGAGGGTTGAGGAGGGGAGGTACCAT
CAGAATTAAGTGGCTAGTGCTCAATTATACTCCATCTTGTAGCTTCAGACTTCAGTGATGGCCTCTGTCAAAAGTCCTAG
AACCTGCAGATTGTCCAGTACTACTAGGCTTGGCATGTACTAGGTAGTATATGTTGTTTGTTTCCTCCTGTTCAATGATC
TGTTGTAGAATGAATAAGGTCAACTTTGAACTTCATAGTGAACTTTTGATGCCACTACTTGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8195.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis