Browse Element(s) Details


Os.8204.1.S1_at

Description gb:AK071498.1
DB_XREF= gi:32981521
TID=Os.8204.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8204 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023099F08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023099F08, full insert sequence.
FL= gb:AK071498.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1903011/11Tic22-like family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g19000OsAffx.16332.1.S1_x_at11/117+11250341..11250942expressed protein
LOC_Os07g19009NANA7+11254554..11255343NA
LOC_Os07g19020OsAffx.5366.1.S1_at9/117+11259497..11261099hypothetical protein
LOC_Os07g19020OsAffx.535.1.S1_at1/117+11259497..11261099hypothetical protein
LOC_Os07g19030Os.8204.1.S1_at11/117+11267234..11271797Tic22-like family protein, expressed
LOC_Os07g19040OsAffx.16333.1.S1_at11/117+11272299..11273192Hevamine A precursor, putative
LOC_Os07g19050OsAffx.5367.1.S1_at10/117+11274920..11276403hypothetical protein
LOC_Os07g19060Os.34129.1.S1_x_at10/117+11278610..11283630Transport protein particle component, Bet3 containing protein, expressed
LOC_Os07g19070Os.15959.1.S1_at11/117+11286296..11290354expressed protein
LOC_Os07g19070OsAffx.5368.1.S1_at1/117+11286296..11290354expressed protein
LOC_Os07g19080OsAffx.5369.1.S1_at11/117+11292030..11293410hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009706cellular_componentchloroplast inner membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8204.1.S1_at--239--9171Chr07:11267737..11267758 (22 bp)
TGCCCGTCGCGCTAAACAAGGTTAT
LOC_Os07g19030
Os.8204.1.S1_at--118--2891Chr07:11268643..11268666 (24 bp)
AAGGTTATCCAACTTAAGTCCGATG
LOC_Os07g19030
Os.8204.1.S1_at--315--6571Chr07:11268690..11268714 (25 bp)
GATTCTTCTCAGGTGGCAAACGCAA
LOC_Os07g19030
Os.8204.1.S1_at--274--6511Chr07:11271004..11271028 (25 bp)
GATATCGTCCAGTTTTCTTCAGAAA
LOC_Os07g19030
Os.8204.1.S1_at--1126--8111Chr07:11271113..11271137 (25 bp)
GGACTTGGATAACTCACTACATCGA
LOC_Os07g19030
Os.8204.1.S1_at--327--5131Chr07:11271152..11271176 (25 bp)
GCAAAAGCCTAACCCTGCTGTAAAA
LOC_Os07g19030
Os.8204.1.S1_at--356--7371Chr07:11271181..11271292 (25 bp)
GTGACATTCAGGTTTCTTCTTTGGA
LOC_Os07g19030
Os.8204.1.S1_at--121--7951Chr07:11271565..11271589 (25 bp)
GGATAGCTCCTCTTCCAAATGGGAT
LOC_Os07g19030
Os.8204.1.S1_at--170--611Chr07:11271591..11271615 (25 bp)
ATGCTGTTTTTATTCCTCCAGGATT
LOC_Os07g19030
Os.8204.1.S1_at--590--3811Chr07:11271606..11271630 (25 bp)
CTCCAGGATTTGATCTTGCTACTAG
LOC_Os07g19030
Os.8204.1.S1_at--651--3831Chr07:11271678..11271702 (25 bp)
CTGCTTAACTGCTCTTGTCATGGAA
LOC_Os07g19030
Target Sequence 
TGCCCGTCGCGCTAAACAAGGTTATCCAACTTAAGTCCGATGGTGTGGCATTTAGATTTGTTCCTGATTCTTCTCAGGTG
GCAAACGCAATGAAGTTAATGGAAAATGAAGGCCAGTATGTGAATGATGGATTTCCAGGGGTTCCNAGTTTTTCAGTCNA
AGGAGTCTAGTCCTGATGAGTNATAACAAGAGATATCGTCCAGTTTTCTTCAGAAAGGAGGACTTGGATAACTCACTACA
TCGANCCTCTCGTGACCAGCAAAAGCCTAACCCTGCTGTAAAAATGGGTGACATTCAGGTTTCTTCTTTGGAGAATATCA
TCAAATCTATGAAGGATAGCTCCTCTTCCAAATGGGATGATGCTGTTTTTATTCCTCCAGGATTTGATCTTGCTACTAGT
TCAAAGCAATCGAATCATGACAACTAGATCTTTATTTATGTTGAAGCTGCTTAACTGCTCTTGTCATGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8204.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis