Browse Element(s) Details


Os.8240.1.S1_at

Description gb:AK122115.1
DB_XREF= gi:37991761
TID=Os.8240.1
CNT=174
FEA=FLmRNA
TIER=FL+Stack
STK=27
UG=Os.8240 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 23829 wheat adenosylhomocysteinase-like protein mRNA, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033128A13, full insert sequence.
FL= gb:AK119539.1 gb:AK060299.1 gb:AK098924.1 gb:AK122115.1 gb:AY224544.1 gb:AK059712.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2685010/11Adenosylhomocysteinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g26820OsAffx.21257.1.S1_at4/1111+14894386..14900805retrotransposon protein, putative, unclassified
LOC_Os11g26820Os.6016.1.A1_s_at1/1111+14894386..14900805retrotransposon protein, putative, unclassified
LOC_Os11g26830OsAffx.31145.1.S1_at11/1111+14904172..14909002ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein
LOC_Os11g26840NANA11+14918363..14919099hypothetical protein
LOC_Os11g26850Os.8240.1.S1_at10/1111+14919682..14922705Adenosylhomocysteinase, putative, expressed
LOC_Os11g26860Os.10151.1.S1_at11/1111+14936469..14939774Serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed
LOC_Os11g26870NANA11+14943526..14943783hypothetical protein
LOC_Os11g26880Os.4638.1.S1_at11/1111+14944641..14945659Rapid ALkalinization Factor family protein, expressed
LOC_Os11g26880OsAffx.8287.1.S1_x_at2/1111+14944641..14945659Rapid ALkalinization Factor family protein, expressed
LOC_Os11g26890OsAffx.19033.1.S1_at11/1111+14946907..14949821expressed protein
LOC_Os11g26890Os.11041.1.S1_s_at11/1111+14946907..14949821expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006346biological_processmethylation-dependent chromatin silencing
GO:0006730biological_processone-carbon compound metabolism
GO:0016441biological_processposttranscriptional gene silencing
GO:0004013molecular_functionadenosylhomocysteinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8240.1.S1_at--134--10811Chr11:14920508..14920532 (25 bp)
TTGTCATGTCCTGCTCATTCACTAA
LOC_Os11g26850
Os.8240.1.S1_at--71--2011Chr11:14920396..14920512 (25 bp)
ACTAACCAGGTCATTGCTCAGCTTG
LOC_Os11g26850
Os.8240.1.S1_at--741--1451Chr11:14920335..14920359 (25 bp)
AGAAGGTGTACGTTCTTCCCAAGCA
LOC_Os11g26850
Os.8240.1.S1_at--531--2071Chr11:14920284..14920308 (25 bp)
ACTTGGGCAAGCTTGGTGCCAGGCT
LOC_Os11g26850
Os.8240.1.S1_at--603--2691Chr11:14920255..14920279 (25 bp)
AAGCTCTCCAAGTCGCAGGCTGACT
LOC_Os11g26850
Os.8240.1.S1_at--340--3831Chr11:14920236..14920260 (25 bp)
CTGACTACATCAGCGTTCCAGTTGA
LOC_Os11g26850
Os.8240.1.S1_at--837--1011Chr11:14920225..14920249 (25 bp)
AGCGTTCCAGTTGAGGGTCCCTACA
LOC_Os11g26850
Os.8240.1.S1_at--171--2831Chr11:14920131..14920155 (25 bp)
AAGTTCGCCATGACGACTCTGGAGT
LOC_Os11g26850
Os.8240.1.S1_at--1070--8032Chr07:15037833..15037869 (24 bp)
GGAGTATCCTGCTTTGTTTTCATCA
NONE
Os.8240.1.S1_at--955--10411NONE
TTATATGCCGTCACCTTAGGAGGAT
NONE
Os.8240.1.S1_at--1066--2131Chr11:14919945..14919969 (25 bp)
ACAGTTTTGTCTTGTTGACTCTACT
LOC_Os11g26850
Target Sequence 
TTGTCATGTCCTGCTCATTCACTAACCAGGTCATTGCTCAGCTTGAGCTGTGGAAGGAGAAGAGCACTGGCAAGTACGAG
AAGAAGGTGTACGTTCTTCCCAAGCACCTCGACGAGAAGGTGGCCGCCCTCCACTTGGGCAAGCTTGGTGCCAGGCTGAC
CAAGCTCTCCAAGTCGCAGGCTGACTACATCAGCGTTCCAGTTGAGGGTCCCTACAAGCCCGCGCACTACCGGTACTAGG
CTGCCCAGCACGACTAGCGGCTGTGGCATGAGAAGTGTCAACTTGAAGTTCGCCATGACGACTCTGGAGTATCCTGCTTT
GTTTTCATCATCTTATATGCCGTCACCTTAGGAGGATTTGTTGTGGGGTTTATGGTTTGAGACTGGTGAAGGGGAGGAAT
GGGAACGCCGTTTGCTTTTGCCCANGAAATAATGGCGTAATTGGGTGGAGTTGGGGAGGTGTGCTTTGGCAGATACAGTT
TTGTCTTGTTGACTCTACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8240.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis