Browse Element(s) Details


Os.8258.1.S1_at

Description gb:AK069705.1
DB_XREF= gi:32979729
TID=Os.8258.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8258 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-119-C02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023027D13, full insert sequence.
FL= gb:AK069705.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1937011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g19320Os.14355.1.S1_at11/118+11552108..11557369Aberrant root formation protein 4, putative, expressed
LOC_Os08g19330OsAffx.17070.1.S1_at11/118+11557838..11558821hypothetical protein
LOC_Os08g19340OsAffx.29275.1.S1_at10/118+11561047..11562701expressed protein
LOC_Os08g19350NANA8+11564672..11570827retrotransposon protein, putative, unclassified
LOC_Os08g19360NANA8+11571445..11574671retrotransposon protein, putative, unclassified
LOC_Os08g19370Os.8258.2.S1_at11/118+11577131..11580887expressed protein
LOC_Os08g19370Os.8258.1.S1_at11/118+11577131..11580887expressed protein
LOC_Os08g19374Os.5762.2.S1_at11/118+11581470..11584571expressed protein
LOC_Os08g19374Os.5762.3.S1_at11/118+11581470..11584571expressed protein
LOC_Os08g19374Os.5762.1.S1_at11/118+11581470..11584571expressed protein
LOC_Os08g19380OsAffx.17071.1.S1_at10/118+11589002..11589581hypothetical protein
LOC_Os08g19380Os.55476.1.S1_at1/118+11589002..11589581hypothetical protein
LOC_Os08g19390NANA8+11590651..11591933retrotransposon protein, putative, unclassified
LOC_Os08g19400Os.28943.1.S1_x_at4/118+11592553..11593987retrotransposon protein, putative, unclassified
LOC_Os08g19410Os.6270.1.S1_at3/118+11596891..11597299NAF domain containing protein
LOC_Os08g19420Os.23482.1.S1_at11/118+11601048..11602472O-methyltransferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8258.1.S1_at--972--3051Chr08:11577661..11577773 (25 bp)
AATCTGGCAGCTGTTCATGAATCTA
LOC_Os08g19370
Os.8258.1.S1_at--898--5351Chr08:11577625..11577649 (25 bp)
GAAGATGCTGCCTCATAGTACCAGT
LOC_Os08g19370
Os.8258.1.S1_at--1091--6331Chr08:11577579..11577603 (25 bp)
GATGCTATGTGATCTATCCACTCTT
LOC_Os08g19370
Os.8258.1.S1_at--733--10131Chr08:11577565..11577589 (25 bp)
TATCCACTCTTTTCGTTTAGTCGTG
LOC_Os08g19370
Os.8258.1.S1_at--325--7471Chr08:11577543..11577567 (25 bp)
GTGTGCCCCATGGTTGATATGTTTT
LOC_Os08g19370
Os.8258.1.S1_at--43--10331Chr08:11577458..11577482 (25 bp)
TTCTTACCTAAGCTGGGATACTCAC
LOC_Os08g19370
Os.8258.1.S1_at--556--5031Chr08:11577397..11577421 (25 bp)
GCAGTATCTATTTGTTATCCTTGTG
LOC_Os08g19370
Os.8258.1.S1_at--666--8751Chr08:11577374..11577398 (25 bp)
TGTAGTTGGCAGTCCGCACGTGTGT
LOC_Os08g19370
Os.8258.1.S1_at--584--9671Chr08:11577293..11577317 (25 bp)
TCACCGTTGTTAACTTTGCTGCCAA
LOC_Os08g19370
Os.8258.1.S1_at--983--1491Chr08:11577255..11577279 (25 bp)
AGCAGTCTAAATGCGCGTGTCCGTG
LOC_Os08g19370
Os.8258.1.S1_at--1025--7451Chr08:11577239..11577263 (25 bp)
GTGTCCGTGCACTCGTGATTGTCAA
LOC_Os08g19370
Target Sequence 
AATCTGGCAGCTGTTCATGAATCTACAAATGGAAGTGAAGATGCTGCCTCATAGTACCAGTTGCCANCATATAGCATACT
AAGGATGCTATGTGATCTATCCACTCTTTTCGTTTAGTCGTGTGCCCCATGGTTGATATGTTTTGTCTATTGCAGGGACT
TATCAACCCTTGACTTAACCTTTNGGATATTGGTGTTTTTCTTTTTCTTACCTAAGCTGGGATACTCACCCAGAATCAAG
ATGCAATCACTAGTTCAGGTGAGTTGCAGTATCTATTTGTTATCCTTGTGTAGTTGGCAGTCCGCACGTGTGTTGTTGGA
TGCTGATTTCATTCAGGTGAAATCGTGTATTAAGTAATGTGTCAATGTGTCACCGTTGTTAACTTTGCTGCCAAGGAAGT
GGGCAAAAGCAGTCTAAATGCGCGTGTCCGTGCACTCGTGATTGTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8258.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis