Browse Element(s) Details


Os.8278.1.S1_at

Description gb:AK071684.1
DB_XREF= gi:32981707
TID=Os.8278.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.8278 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023108B15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023108B15, full insert sequence.
FL= gb:AK071684.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3728010/11MaoC like domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g37240OsAffx.6503.1.S1_at11/119+21496134..21514635Glutathione S-transferase, C-terminal domain containing protein, expressed
LOC_Os09g37250OsAffx.6504.1.S1_at10/119+21515372..21517140ARID/BRIGHT DNA binding domain containing protein
LOC_Os09g37260OsAffx.18025.1.S1_at11/119+21523888..21525085hypothetical protein
LOC_Os09g37270Os.10858.1.S1_at11/119+21525495..21529378pollen-specific kinase partner protein, putative, expressed
LOC_Os09g37280Os.8278.1.S1_at10/119+21537399..21542468MaoC like domain containing protein, expressed
LOC_Os09g37290OsAffx.30166.1.S1_at11/119+21543393..21543697hypothetical protein
LOC_Os09g37300Os.50458.1.S1_at11/119+21543867..21546744Sodium/hydrogen exchanger family protein, expressed
LOC_Os09g37300OsAffx.11114.1.S1_x_at1/119+21543867..21546744Sodium/hydrogen exchanger family protein, expressed
LOC_Os09g37300OsAffx.11114.1.S1_at1/119+21543867..21546744Sodium/hydrogen exchanger family protein, expressed
LOC_Os09g37310OsAffx.382.1.S1_at2/119+21550279..21556824retrotransposon protein, putative, unclassified
LOC_Os09g37310OsAffx.21756.1.S1_at1/119+21550279..21556824retrotransposon protein, putative, unclassified
LOC_Os09g37320NANA9+21558741..21563666retrotransposon protein, putative, unclassified
LOC_Os09g37330Os.39652.1.S1_at11/119+21565259..21565999auxin induced protein, putative, expressed
LOC_Os09g37340NANA9+21567180..21567572hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8278.1.S1_at--1106--3031Chr09:21538725..21538745 (21 bp)
AATCCCAGGCACTATTGTACAGGTT
LOC_Os09g37280
Os.8278.1.S1_at--1122--351Chr09:21538689..21538713 (25 bp)
ATAATCCTTTGCATTCAGACCCTAT
LOC_Os09g37280
Os.8278.1.S1_at--396--1391Chr09:21538673..21538697 (25 bp)
AGACCCTATGGTTGCGCAGGTTGCA
LOC_Os09g37280
Os.8278.1.S1_at--245--1011NONE
AGGTTGCAGGGTTCACTCGTCCAAT
NONE
Os.8278.1.S1_at--847--3091Chr09:21538044..21538068 (25 bp)
AATACTGCATGGTCTCAGTTCCCTT
LOC_Os09g37280
Os.8278.1.S1_at--791--5511Chr09:21537963..21537987 (25 bp)
GAAAAGCATCTTTGGCCGTTTTCTT
LOC_Os09g37280
Os.8278.1.S1_at--104--10571Chr09:21537943..21537967 (25 bp)
TTCTTCTGCATGTCTATCCTGGAGA
LOC_Os09g37280
Os.8278.1.S1_at--242--871Chr09:21537811..21537915 (25 bp)
AGGCCAGAGGGTGCTTTATCAAACA
LOC_Os09g37280
Os.8278.1.S1_at--184--7331Chr09:21537762..21537786 (25 bp)
GTGCTTTCTGGATATGTGTTGCTCA
LOC_Os09g37280
Os.8278.1.S1_at--385--2191Chr09:21537736..21537760 (25 bp)
ACACATCCCCTCATCATTGTAAGTG
LOC_Os09g37280
Os.8278.1.S1_at--43--351Chr09:21537683..21537707 (25 bp)
ATAAATTGGTGCCTGCCTGCTTGTA
LOC_Os09g37280
Target Sequence 
AATCCCAGGCACTATTGTACAGGTTATCTGGGGACTATAATCCTTTGCATTCAGACCCTATGGTTGCGCAGGTTGCAGGG
TTCACTCGTCCAATACTGCATGGTCTCAGTTCCCTTGGATTCGCGATCCGCGCTGTCATCAAATCTTTCTGCAATGGAGA
TCCAACAGCAGTGAAAAGCATCTTTGGCCGTTTTCTTCTGCATGTCTATCCTGGAGAAACTTTAGTCACTGAAATGTGGC
TCCAAGGCCAGAGGGTGCTTTATCAAACAAAGGTCAAGGAACGCAACCGCGCCGTGCTTTCTGGATATGTGTTGCTCAAA
CACATCCCCTCATCATTGTAAGTGNTGTATCATATTCTTGACTGGATATTTTATAAATTGGTGCCTGCCTGCTTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8278.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis