Browse Element(s) Details


Os.8323.1.S1_a_at

Description gb:AK101327.1
DB_XREF= gi:32986536
TID=Os.8323.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.8323 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) serinethreonine protein kinase (DPK3) mRNA, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033034G09, full insert sequence.
FL= gb:AY156512.1 gb:AK101327.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0779011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g07770OsAffx.24154.1.S1_at11/112+4058205..4060228transfactor, putative, expressed
LOC_Os02g07770OsAffx.24154.1.S1_x_at11/112+4058205..4060228transfactor, putative, expressed
LOC_Os02g07780Os.51367.2.S1_x_at11/112+4073880..4077946SBP domain containing protein, expressed
LOC_Os02g07780Os.51367.1.S2_at11/112+4073880..4077946SBP domain containing protein, expressed
LOC_Os02g07780Os.51367.1.S1_x_at11/112+4073880..4077946SBP domain containing protein, expressed
LOC_Os02g07780Os.51367.1.S3_at11/112+4073880..4077946SBP domain containing protein, expressed
LOC_Os02g07780OsAffx.2442.1.S1_x_at1/112+4073880..4077946SBP domain containing protein, expressed
LOC_Os02g07790Os.8323.1.S1_a_at11/112+4078516..4081523Protein kinase domain containing protein, expressed
LOC_Os02g07800OsAffx.11931.1.S1_at10/112+4083020..4086044expressed protein
LOC_Os02g07810OsAffx.24155.1.S1_x_at9/112+4086434..4089162Leucine Rich Repeat family protein, expressed
LOC_Os02g07810OsAffx.24155.1.S1_at8/112+4086434..4089162Leucine Rich Repeat family protein, expressed
LOC_Os02g07810OsAffx.5111.1.S1_x_at1/112+4086434..4089162Leucine Rich Repeat family protein, expressed
LOC_Os02g07810Os.15849.2.A1_s_at1/112+4086434..4089162Leucine Rich Repeat family protein, expressed
LOC_Os02g07820Os.11392.2.S1_at11/112+4095838..4098077expressed protein
LOC_Os02g07830Os.50590.2.A1_at10/112+4103384..4105654Cation transport protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8323.1.S1_a_at--502--151Chr02:4078684..4078708 (25 bp)
ATTAGTACCAGCTCATAGGGTCTGT
LOC_Os02g07790
Os.8323.1.S1_a_at--1117--1571Chr02:4078675..4078699 (25 bp)
AGCTCATAGGGTCTGTGTGCCCACA
LOC_Os02g07790
Os.8323.1.S1_a_at--1055--7451Chr02:4078661..4078685 (25 bp)
GTGTGCCCACAGAAGTTCCTAGGCT
LOC_Os02g07790
Os.8323.1.S1_a_at--162--2831Chr02:4078649..4078673 (25 bp)
AAGTTCCTAGGCTTTGAGCTTCTGT
LOC_Os02g07790
Os.8323.1.S1_a_at--23--10771Chr02:4078636..4078660 (25 bp)
TTGAGCTTCTGTGTTATTCGATTCT
LOC_Os02g07790
Os.8323.1.S1_a_at--779--10611Chr02:4078620..4078644 (25 bp)
TTCGATTCTATCTTGTGTGAGTTGC
LOC_Os02g07790
Os.8323.1.S1_a_at--118--7471Chr02:4078606..4078630 (25 bp)
GTGTGAGTTGCACAGCTCAAGTAAT
LOC_Os02g07790
Os.8323.1.S1_a_at--159--4831Chr02:4078592..4078616 (25 bp)
GCTCAAGTAATCTCTTCTGGAATAT
LOC_Os02g07790
Os.8323.1.S1_a_at--705--6271Chr02:4078566..4078590 (25 bp)
GATGTTGCCTTGTATGTTAACAGGA
LOC_Os02g07790
Os.8323.1.S1_a_at--108--7971Chr02:4078544..4078568 (25 bp)
GGATCTAATGGAGCTTTCCTATGTT
LOC_Os02g07790
Os.8323.1.S1_a_at--18--731Chr02:4078524..4078548 (25 bp)
ATGTTAATAACATCTGCTTGTTGGT
LOC_Os02g07790
Target Sequence 
ATTAGTACCAGCTCATAGGGTCTGTGTGCCCACAGAAGTTCCTAGGCTTTGAGCTTCTGTGTTATTCGATTCTATCTTGT
GTGAGTTGCACAGCTCAAGTAATCTCTTCTGGAATATAGATGTTGCCTTGTATGTTAACAGGATCTAATGGAGCTTTCCT
ATGTTAATAACATCTGCTTGTTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8323.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis