Browse Element(s) Details


Os.8344.1.S1_at

Description gb:AK066623.1
DB_XREF= gi:32976641
TID=Os.8344.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8344 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013073L03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013073L03, full insert sequence.
FL= gb:AK066623.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0844011/11Lipoamide dehydrogenase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g08400Os.46949.1.A1_at6/117+4311094..4317484guanylate-binding family protein, putative, expressed
LOC_Os07g08410Os.7076.1.S1_at3/117+4317380..4318468expressed protein
LOC_Os07g08420Os.1501.1.S1_at11/117+4320535..4324972bZIP transcription factor family protein, expressed
LOC_Os07g08430Os.32503.1.S1_x_at11/117+4328716..4331942Indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed
LOC_Os07g08430Os.32503.1.S1_at11/117+4328716..4331942Indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed
LOC_Os07g08430OsAffx.10400.1.S1_x_at6/117+4328716..4331942Indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed
LOC_Os07g08430Os.18743.2.S1_x_at2/117+4328716..4331942Indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed
LOC_Os07g08440Os.8344.1.S1_at11/117+4336814..4340518Lipoamide dehydrogenase, putative, expressed
LOC_Os07g08450OsAffx.28344.1.S1_at11/117+4347336..4352164expressed protein
LOC_Os07g08460Os.8622.1.S1_at11/117+4353511..4354872AUX/IAA family protein, expressed
LOC_Os07g08470OsAffx.16156.1.S1_at11/117+4359390..4359617hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8344.1.S1_at--229--831Chr07:4339934..4339958 (25 bp)
ATGGTATATGATGTCGTCTCCTCTT
LOC_Os07g08440
Os.8344.1.S1_at--442--3191Chr07:4340030..4340054 (25 bp)
CAATGCCCCTATCGAGTGTGAGTGA
LOC_Os07g08440
Os.8344.1.S1_at--915--591Chr07:4340081..4340105 (25 bp)
ATGCGCTCATATCATTTCCTTTTGG
LOC_Os07g08440
Os.8344.1.S1_at--991--10651Chr07:4340096..4340120 (25 bp)
TTCCTTTTGGGTCTGTAGTGCACTA
LOC_Os07g08440
Os.8344.1.S1_at--791--2651Chr07:4340299..4340323 (25 bp)
AAGCGGCAACGGATGTTTTAGTCAA
LOC_Os07g08440
Os.8344.1.S1_at--344--8091Chr07:4340359..4340383 (25 bp)
GGAGCGTGCTCCTTATGTGCTTTAC
LOC_Os07g08440
Os.8344.1.S1_at--821--8691Chr07:4340374..4340398 (25 bp)
TGTGCTTTACTTTTCTGTCTGCAAG
LOC_Os07g08440
Os.8344.1.S1_at--220--10071Chr07:4340402..4340426 (25 bp)
TAGTCTTGATAAGAACCTGCCCTCT
LOC_Os07g08440
Os.8344.1.S1_at--897--9151Chr07:4340419..4340443 (25 bp)
TGCCCTCTTAAAGTTTTTAGCCTCT
LOC_Os07g08440
Os.8344.1.S1_at--106--4471Chr07:4340438..4340462 (25 bp)
GCCTCTTGTATTATTGGTTCACTCA
LOC_Os07g08440
Os.8344.1.S1_at--201--251Chr07:4340474..4340498 (25 bp)
ATATCATCTGTGCTGACTTAACATG
LOC_Os07g08440
Target Sequence 
ATGGTATATGATGTCGTCTCCTCTTTTCTTCTTTTCTTCAAAGGTGCTTTGATTGCAAAGATATGGTAAGNGATGTTNTC
ATGCTCCTACATCTTTCAATGCCCCTATCGAGTGTGAGTGATGGGTAGAGCTACCAAAGAGTNTGGCATGCGCTCATATC
ATTTCCTTTTGGGTCTGTAGTGCACTAGCCATACACTTTGTGGTGGGGTCGGTCAGTCTTTTGGTAGTGGACGTTTGGAC
TAATGAAAAGAAGCTGATGTATGTGTGTTAAGTCTGCACAAATGGTTGACACAATTTAAAAGAATGTTCAGATGGAAGAT
GATGTTGACGGTGAATGGTGGTGCTATTTCTTGTNTATTTTTCCAAAGCGGCAACGGATGTTTTAGTCAATGGAGGNGAA
GCGTGTATTAATNTGGTTGCTAGTGGGAGCGTGCTCCTTATGTGCTTTACTTTTCTGTCTGCAAGTCATAGTCTTGATAA
GAACCTGCCCTCTTAAAGTTTTTAGCCTCTTGTATTATTGGTTCACTCATGAAACTATATATATCATCTGTGCTGACTTA
ACATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8344.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis