Browse Element(s) Details


Os.8362.1.S1_at

Description gb:AK060187.1
DB_XREF= gi:32970205
TID=Os.8362.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.8362 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0020E23.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-001-D05, full insert sequence.
FL= gb:AK060187.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g036909/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g03660Os.23283.1.S1_at10/1110+1606380..1620106F-box domain containing protein, expressed
LOC_Os10g03660Os.8362.2.S1_x_at1/1110+1606380..1620106F-box domain containing protein, expressed
LOC_Os10g03660Os.27021.1.S1_at1/1110+1606380..1620106F-box domain containing protein, expressed
LOC_Os10g03660Os.27021.1.S1_x_at1/1110+1606380..1620106F-box domain containing protein, expressed
LOC_Os10g03670Os.46556.2.A1_at11/1110+1626713..1630918NB-ARC domain containing protein, expressed
LOC_Os10g03680OsAffx.18112.1.S1_at10/1110+1631136..1634213hypothetical protein
LOC_Os10g03690Os.8362.2.S1_x_at10/1110+1640759..1643397F-box domain containing protein, expressed
LOC_Os10g03690Os.8362.1.S1_at9/1110+1640759..1643397F-box domain containing protein, expressed
LOC_Os10g03700OsAffx.19421.1.S1_at2/1110+1644919..1655502transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g03700Os.46058.2.S1_x_at1/1110+1644919..1655502transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g03710OsAffx.30261.2.S1_s_at11/1110+1656435..1659338hypothetical protein
LOC_Os10g03710OsAffx.30261.1.S1_at8/1110+1656435..1659338hypothetical protein
LOC_Os10g03720OsAffx.20772.1.S1_at11/1110+1662167..1662628hypothetical protein
LOC_Os10g03730Os.46555.1.S1_x_at10/1110+1665240..1668358F-box domain containing protein, expressed
LOC_Os10g03730Os.46555.1.S1_at10/1110+1665240..1668358F-box domain containing protein, expressed
LOC_Os10g03730Os.46058.2.S1_x_at5/1110+1665240..1668358F-box domain containing protein, expressed
LOC_Os10g03730Os.46058.1.S1_at1/1110+1665240..1668358F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8362.1.S1_at--485--4431Chr10:1641190..1641214 (25 bp)
GCCTCTAATTTTCTGGCCTGAGTAG
LOC_Os10g03690
Os.8362.1.S1_at--974--8551Chr10:1641087..1641111 (25 bp)
TGGTTGATTCCAGCTGAGTTCGATG
LOC_Os10g03690
Os.8362.1.S1_at--230--6071Chr10:1641072..1641096 (25 bp)
GAGTTCGATGGCACATAAGACTAGT
LOC_Os10g03690
Os.8362.1.S1_at--995--2751Chr10:1641056..1641080 (25 bp)
AAGACTAGTTTATCTTCCGCTCTTG
LOC_Os10g03690
Os.8362.1.S1_at--905--9571Chr10:1641036..1641060 (25 bp)
TCTTGTTTGGTGCTACGACTTGAGT
LOC_Os10g03690
Os.8362.1.S1_at--869--1851Chr10:1641022..1641046 (25 bp)
ACGACTTGAGTGCACCCAATCAGTT
LOC_Os10g03690
Os.8362.1.S1_at--1067--6971Chr10:1640960..1640984 (25 bp)
GTACCTTGTAATGTCACTCAGTGTT
LOC_Os10g03690
Os.8362.1.S1_at--767--10211Chr10:1640921..1640945 (25 bp)
TATTCGTTCTGCCTGTTTGGTTACA
LOC_Os10g03690
Os.8362.1.S1_at--290--2111Chr10:1640849..1640873 (25 bp)
ACATGTTTGAGTATCCCATATGGGA
LOC_Os10g03690
Os.8362.1.S1_at--734--6771NONE
GTTACATCCTGTGATCTGCTTTCAA
NONE
Os.8362.1.S1_at--972--10191NONE
TATATCATCAGCTTTTCCCCTTGTC
NONE
Target Sequence 
GCCTCTAATTTTCTGGCCTGAGTAGATATGAAATATCNAAGGATCTCTTCTCTTGTTGTCCCNTNGNAAAATAATATTCT
TTTTGGGATGGATATACATACATTGGTTGATTCCAGCTGAGTTCGATGGCACATAAGACTAGTTTATCTTCCGCTCTTGT
TTGGTGCTACGACTTGAGTGCACCCAATCAGTTNTCTTGGATCTTGACTTCTTGAGTTGCTCCNTTGCTTGTACCTTGTA
ATGTCACTCAGTGTTGTTCTATNCGCGGATATTCGTTCTGCCTGTTTGGTTACATTGTNTTGCTNGNAAACCNTTGATCA
CATGATCAGAACNCTGCATGTTACATGTTTGAGTATCCCATATGGGATTCATGTTTTTTTTTTCTGATAGTTTTGTTACA
TCCTGTGATCTGCTTTCAATTTTAGTTGATATATCATCAGCTTTTCCCCTTGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8362.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis