Browse Element(s) Details


Os.8362.2.S1_x_at

Description gb:NM_194687.1
DB_XREF= gi:37530733
TID=Os.8362.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.8362 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) unknown protein (OSJNBa0020E23.4), mRNA.
PROD=unknown protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0369010/11F-box domain containing protein, expressed
LOC_Os10g038501/11F-box domain containing protein, expressed
LOC_Os10g036601/11F-box domain containing protein, expressed
LOC_Os10g039001/11hypothetical protein
LOC_Os10g037801/11F-box domain containing protein, expressed
LOC_Os10g037601/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g03660Os.23283.1.S1_at10/1110+1606380..1620106F-box domain containing protein, expressed
LOC_Os10g03660Os.8362.2.S1_x_at1/1110+1606380..1620106F-box domain containing protein, expressed
LOC_Os10g03660Os.27021.1.S1_at1/1110+1606380..1620106F-box domain containing protein, expressed
LOC_Os10g03660Os.27021.1.S1_x_at1/1110+1606380..1620106F-box domain containing protein, expressed
LOC_Os10g03670Os.46556.2.A1_at11/1110+1626713..1630918NB-ARC domain containing protein, expressed
LOC_Os10g03680OsAffx.18112.1.S1_at10/1110+1631136..1634213hypothetical protein
LOC_Os10g03690Os.8362.2.S1_x_at10/1110+1640759..1643397F-box domain containing protein, expressed
LOC_Os10g03690Os.8362.1.S1_at9/1110+1640759..1643397F-box domain containing protein, expressed
LOC_Os10g03700OsAffx.19421.1.S1_at2/1110+1644919..1655502transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g03700Os.46058.2.S1_x_at1/1110+1644919..1655502transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g03710OsAffx.30261.2.S1_s_at11/1110+1656435..1659338hypothetical protein
LOC_Os10g03710OsAffx.30261.1.S1_at8/1110+1656435..1659338hypothetical protein
LOC_Os10g03720OsAffx.20772.1.S1_at11/1110+1662167..1662628hypothetical protein
LOC_Os10g03730Os.46555.1.S1_x_at10/1110+1665240..1668358F-box domain containing protein, expressed
LOC_Os10g03730Os.46555.1.S1_at10/1110+1665240..1668358F-box domain containing protein, expressed
LOC_Os10g03730Os.46058.2.S1_x_at5/1110+1665240..1668358F-box domain containing protein, expressed
LOC_Os10g03730Os.46058.1.S1_at1/1110+1665240..1668358F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8362.2.S1_x_at--1153--7854Chr10:1642818..1642842 (25 bp)
GGTTTCTTCAAGCAACTCGAGTCGG
LOC_Os10g03690
Os.8362.2.S1_x_at--1147--1271Chr10:1642777..1642801 (25 bp)
AGATCTCTCCTTAGATGACTGCGTC
LOC_Os10g03690
Os.8362.2.S1_x_at--803--10451Chr10:1642751..1642775 (25 bp)
TTAGCGGTGATGAGATCTCCTCCCA
LOC_Os10g03690
Os.8362.2.S1_x_at--817--3094Chr10:1642665..1642689 (25 bp)
AATACTCCAAGTGTTACTTCTCTGA
LOC_Os10g03690
Os.8362.2.S1_x_at--427--10591Chr10:1642648..1642672 (25 bp)
TTCTCTGACATTGTGGAGGCCTGCG
LOC_Os10g03690
Os.8362.2.S1_x_at--503--4271Chr10:1642629..1642653 (25 bp)
CCTGCGCACGGCATAGTTGTACTGA
LOC_Os10g03690
Os.8362.2.S1_x_at--275--451Chr10:1642523..1642547 (25 bp)
ATCTATGGGCACTTTCTGGTGTTAA
LOC_Os10g03690
Os.8362.2.S1_x_at--41--10211NONE
TATTATCTGGGCGAGAACACACCAA
NONE
Os.8362.2.S1_x_at--805--2691Chr10:1641505..1641528 (24 bp)
AAGCTAACACTGAAACTCCATCCGT
LOC_Os10g03690
Os.8362.2.S1_x_at--869--4331Chr10:1641391..1641511 (25 bp)
CCATCCGTTTCGTTATCAGCAACAA
LOC_Os10g03690
Os.8362.2.S1_x_at--649--1711Chr10:1641275..1641299 (25 bp)
ACCACTTGGTTGACTTCTTTGTTAG
LOC_Os10g03690
Target Sequence 
GGTTTCTTCAAGCAACTCGAGTCGGGCTGTCCAGCATTGGAAGATCTCTCCTTAGATGACTGCGTCATTAGCGGTGATGA
GATCTCCTCCCAGACACTGAAGGTTTTGACCATCAAGGACACTAAGTTCTCCATGGAACACAAGACTTCTATTAATACTC
CAAGTGTTACTTCTCTGACATTGTGGAGGCCTGCGCACGGCATAGTTGTACTGAAGGACATGGCATCAGTAGTGACTGCA
TCAGTTAAACCTAGTGAGTTTATTGATGAATTTGATGCTAGGGGTTTGCGCCAATATCTATGGGCACTTTCTGGTGTTAA
AAATTTGGAGTTCTATTATCTGGGCGAGAACACACCAAGACTAGAGAAGCTAACACTGAAACTCCATCCGTTTCGTTATC
AGCAACAAAGAATCATTGGTGAGCTTACTGAAAGATCATTTACATGTGGTCATCTTAAGATTGTTGAAGTCATATGCTCG
GAGAATGATCCCCTGATCAACCACTTGGTTGACTTCTTTGTTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8362.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis