Browse Element(s) Details


Os.8380.1.S1_at

Description gb:AK107369.1
DB_XREF= gi:32992578
TID=Os.8380.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.8380 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-127-B02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-127-B02, full insert sequence.
FL= gb:AK107369.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3133011/11No apical meristem protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g31310NANA11+17760449..17762288retrotransposon protein, putative, unclassified
LOC_Os11g31320NANA11+17764100..17764924retrotransposon protein, putative, unclassified
LOC_Os11g31330Os.8380.1.S1_at11/1111+17785637..17787999No apical meristem protein, expressed
LOC_Os11g31340OsAffx.19101.1.S1_at10/1111+17791770..17793856No apical meristem protein
LOC_Os11g31349NANA11+17795597..17796810NA
LOC_Os11g31360OsAffx.7264.1.S1_at11/1111+17798605..17801063No apical meristem protein, expressed
LOC_Os11g31370OsAffx.31242.1.S1_at11/1111+17804544..17805316hypothetical protein
LOC_Os11g31380OsAffx.7265.1.S1_at10/1111+17809082..17810981No apical meristem protein
LOC_Os11g31390OsAffx.7266.1.S1_at10/1111+17811820..17816049hypothetical protein
LOC_Os11g31390OsAffx.17205.1.S1_at1/1111+17811820..17816049hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8380.1.S1_at--773--8931Chr11:17787557..17787581 (25 bp)
TGACCCCTCCTCTTTGGAGGAAGGG
LOC_Os11g31330
Os.8380.1.S1_at--600--2931Chr11:17787654..17787678 (25 bp)
AAGGAAGTGAACTGAGTCTCAAGAA
LOC_Os11g31330
Os.8380.1.S1_at--476--5832Chr11:17787714..17787738 (25 bp)
GACCTGCATGCATCCTATATATGTG
LOC_Os11g31330
Os.8380.1.S1_at--815--771Chr11:17787734..17787758 (25 bp)
ATGTGCTTTTATGTTCAAGTTGGAG
LOC_Os11g31330
Os.8380.1.S1_at--814--8051Chr11:17787755..17787779 (25 bp)
GGAGAACTATGTGTGTTGTCTTTAA
LOC_Os11g31330
Os.8380.1.S1_at--615--6611Chr11:17787769..17787793 (25 bp)
GTTGTCTTTAAGTTGGAGTACTCTA
LOC_Os11g31330
Os.8380.1.S1_at--315--6091Chr11:17787784..17787808 (25 bp)
GAGTACTCTAAGCTATTCGATCTGG
LOC_Os11g31330
Os.8380.1.S1_at--572--4051Chr11:17787801..17787825 (25 bp)
CGATCTGGAGATTATGCTGTTTTTA
LOC_Os11g31330
Os.8380.1.S1_at--1011--5331Chr11:17787920..17787944 (25 bp)
GAAGTTCTAGAGAGGTAGCTACATT
LOC_Os11g31330
Os.8380.1.S1_at--166--6151Chr11:17787931..17787955 (25 bp)
GAGGTAGCTACATTTCTGGAAATTG
LOC_Os11g31330
Os.8380.1.S1_at--155--5611Chr11:17787949..17787973 (25 bp)
GAAATTGTTGCATCTTCCTTTCTTC
LOC_Os11g31330
Target Sequence 
TGACCCCTCCTCTTTGGAGGAAGGGAGTGATGAGTCTGCCNGTGATGGTGAAGATAAGGATGGTGATGGCATGAATGAAG
CAAATTGATCGAGTGTGAAGGAAGTGAACTGAGTCTCAAGAATNAAAACTGCAAGTATGGNGCTCCATTCCNTGGAAGAC
CTGCATGCATCCTATATATGTGCTTTTATGTTCAAGTTGGAGAACTATGTGTGTTGTCTTTAAGTTGGAGTACTCTAAGC
TATTCGATCTGGAGATTATGCTGTTTTTAATAAAAGTTTGNAGTGTATNTGTCCTGTTTAATTAGTTTCAAGAAAGNCAA
GCNTGTTTGGGTTCTAGGATGAACNAAGTCNTCCNAGATGCNAAGAAGTTCTAGAGAGGTAGCTACATTTCTGGAAATTG
TTGCATCTTCCTTTCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8380.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis