Browse Element(s) Details


OsAffx.7264.1.S1_at

Description tigr:9639.m02845
TID=OsAffx.7264.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=GRAB1-like protein, 10550-11502 (imported) - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3136011/11No apical meristem protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g31330Os.8380.1.S1_at11/1111+17785637..17787999No apical meristem protein, expressed
LOC_Os11g31340OsAffx.19101.1.S1_at10/1111+17791770..17793856No apical meristem protein
LOC_Os11g31349NANA11+17795597..17796810NA
LOC_Os11g31360OsAffx.7264.1.S1_at11/1111+17798605..17801063No apical meristem protein, expressed
LOC_Os11g31370OsAffx.31242.1.S1_at11/1111+17804544..17805316hypothetical protein
LOC_Os11g31380OsAffx.7265.1.S1_at10/1111+17809082..17810981No apical meristem protein
LOC_Os11g31390OsAffx.7266.1.S1_at10/1111+17811820..17816049hypothetical protein
LOC_Os11g31390OsAffx.17205.1.S1_at1/1111+17811820..17816049hypothetical protein
LOC_Os11g31400Os.12618.1.S1_at10/1111+17818820..17819726expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7264.1.S1_at--894--2911Chr11:17799020..17799044 (25 bp)
AAGGAGAACAGCCACCCTAGGGACT
LOC_Os11g31360
OsAffx.7264.1.S1_at--888--5491Chr11:17799025..17799049 (25 bp)
GAACAGCCACCCTAGGGACTATGAA
LOC_Os11g31360
OsAffx.7264.1.S1_at--132--5711Chr11:17799041..17799065 (25 bp)
GACTATGAAAGCAACCATGCCGCTG
LOC_Os11g31360
OsAffx.7264.1.S1_at--297--5571Chr11:17799047..17799071 (25 bp)
GAAAGCAACCATGCCGCTGGTGATG
LOC_Os11g31360
OsAffx.7264.1.S1_at--647--3911Chr11:17799076..17799097 (22 bp)
CTGGAGATTGGCAGGCACAGAGAAA
LOC_Os11g31360
OsAffx.7264.1.S1_at--922--2411Chr11:17800548..17800572 (25 bp)
AAAACAATGGCAGTCCGTCTGCTGC
LOC_Os11g31360
OsAffx.7264.1.S1_at--762--591Chr11:17800581..17800605 (25 bp)
ATGCCCCTCTGGTGGAAACCATGGT
LOC_Os11g31360
OsAffx.7264.1.S1_at--607--4231Chr11:17800679..17800703 (25 bp)
CCGTCCATTGGCAATGCAAGGGAAG
LOC_Os11g31360
OsAffx.7264.1.S1_at--689--3011Chr11:17800730..17800754 (25 bp)
AATGCAGGCGATCGTCAAGTCACTT
LOC_Os11g31360
OsAffx.7264.1.S1_at--1076--8371Chr11:17800736..17800760 (25 bp)
GGCGATCGTCAAGTCACTTCATTGA
LOC_Os11g31360
OsAffx.7264.1.S1_at--549--8992Chr11:17801009..17801033 (25 bp)
TGAAGCTGGAGTCTATGTTTTTCTG
LOC_Os11g31360
Target Sequence 
AAGGAGAACAGCCACCCTAGGGACTATGAAAGCAACCATGCCGCTGGTGATGGGTTCTGGAGATTGGCAGGCACAGAGAA
AAACAATGGCAGTCCGTCTGCTGCCCATACTCATGCCCCTCTGGTGGAAACCATGGTCGAACCTGATAATTCTTGGATGA
TATGTCGCATTTACAAGAAGAGGCAGCGTGCACCGCAGGTCATCATCCCTCCGTCCATTGGCAATGCAAGGGAAGCTGTC
CTCGCCGTTCCTGCCATTGGCAATGCAGGCGATCGTCAAGTCACTTCATTGACTTCCCAGGGCATAGATGTTTCGAGGAG
GGGAGTGATGAGTCTGCCAATGTCATCACAAAGGACAAGGGCAGTGATGGTTATGGGAAGAACTAATAGAAGGAAGAAAC
TCGGCTTAGTTTAGAATAAAAATTGCAGGTGGGATGCTTCCTCATCGCAAGAAAGACCTGCAAGCTATTTATGCAATTTA
ATTTTATGTTTGTGCTTGAGACTATGCATTATGTTTAATTGAGTTGGTACTCTATGATGTTGAAGCTGGAGTCTATGTTT
TTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7264.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis