Browse Element(s) Details


OsAffx.31242.1.S1_at

Description tigr:9639.m02846
TID=OsAffx.31242.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3137011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g31330Os.8380.1.S1_at11/1111+17785637..17787999No apical meristem protein, expressed
LOC_Os11g31340OsAffx.19101.1.S1_at10/1111+17791770..17793856No apical meristem protein
LOC_Os11g31349NANA11+17795597..17796810NA
LOC_Os11g31360OsAffx.7264.1.S1_at11/1111+17798605..17801063No apical meristem protein, expressed
LOC_Os11g31370OsAffx.31242.1.S1_at11/1111+17804544..17805316hypothetical protein
LOC_Os11g31380OsAffx.7265.1.S1_at10/1111+17809082..17810981No apical meristem protein
LOC_Os11g31390OsAffx.7266.1.S1_at10/1111+17811820..17816049hypothetical protein
LOC_Os11g31390OsAffx.17205.1.S1_at1/1111+17811820..17816049hypothetical protein
LOC_Os11g31400Os.12618.1.S1_at10/1111+17818820..17819726expressed protein
LOC_Os11g31410OsAffx.25952.1.S1_s_at2/1111+17827401..17833264retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31242.1.S1_at--127--10531Chr11:17804687..17804711 (25 bp)
TTCATCACTGACATCGACATCCTTC
LOC_Os11g31370
OsAffx.31242.1.S1_at--1085--3651Chr11:17804708..17804732 (25 bp)
CTTCACCATAATCCCTTGGACATTG
LOC_Os11g31370
OsAffx.31242.1.S1_at--424--8531Chr11:17804724..17804935 (25 bp)
TGGACATTGTCCCAACACGGCAGGA
LOC_Os11g31370
OsAffx.31242.1.S1_at--544--2711Chr11:17804976..17805000 (25 bp)
AAGCACCATGGCGACAACTGTAGGA
LOC_Os11g31370
OsAffx.31242.1.S1_at--20--2571Chr11:17804991..17805015 (25 bp)
AACTGTAGGAACCATGCCGCCGGCG
LOC_Os11g31370
OsAffx.31242.1.S1_at--968--8191Chr11:17805123..17805147 (25 bp)
GGAAGTCTTCATTTGCCGAGAGCAT
LOC_Os11g31370
OsAffx.31242.1.S1_at--1047--1331Chr11:17805163..17805187 (25 bp)
AGAGTTCCAACTAGCTGGTTCCTAC
LOC_Os11g31370
OsAffx.31242.1.S1_at--898--9971Chr11:17805185..17805209 (25 bp)
TACCTCTTGCCTTGCTTTGTGATGC
LOC_Os11g31370
OsAffx.31242.1.S1_at--850--10831Chr11:17805201..17805225 (25 bp)
TTGTGATGCGGTTTGCCACCAGTGA
LOC_Os11g31370
OsAffx.31242.1.S1_at--489--5511Chr11:17805233..17805257 (25 bp)
GAACAACCTTTTGGCTGCACTAGAG
LOC_Os11g31370
OsAffx.31242.1.S1_at--524--10031Chr11:17805253..17805277 (25 bp)
TAGAGTGACCATTGCCAACATGAGA
LOC_Os11g31370
Target Sequence 
TTCATCACTGACATCGACATCCTTCACCATAATCCCTTGGACATTGTCCCAACACGGCAGGAGAAGAAGAACGGGAAGCA
CTTCTTCACCCGTAAGGAGAAAAAGCACCATGGCGACAACTGTAGGAACCATGCCGCCGGCGTTGGGTTTTGGAGGAAGT
CTTCATTTGCCGAGAGCATGGAATGGGCAATGCAAGAGTTCCAACTAGCTGGTTCCTACCTCTTGCCTTGCTTTGTGATG
CGGTTTGCCACCAGTGATGGCACAGAACAACCTTTTGGCTGCACTAGAGTGACCATTGCCAACATGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31242.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis