Browse Element(s) Details


OsAffx.7266.1.S1_at

Description tigr:9639.m02848
TID=OsAffx.7266.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3139010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g31330Os.8380.1.S1_at11/1111+17785637..17787999No apical meristem protein, expressed
LOC_Os11g31340OsAffx.19101.1.S1_at10/1111+17791770..17793856No apical meristem protein
LOC_Os11g31349NANA11+17795597..17796810NA
LOC_Os11g31360OsAffx.7264.1.S1_at11/1111+17798605..17801063No apical meristem protein, expressed
LOC_Os11g31370OsAffx.31242.1.S1_at11/1111+17804544..17805316hypothetical protein
LOC_Os11g31380OsAffx.7265.1.S1_at10/1111+17809082..17810981No apical meristem protein
LOC_Os11g31390OsAffx.7266.1.S1_at10/1111+17811820..17816049hypothetical protein
LOC_Os11g31390OsAffx.17205.1.S1_at1/1111+17811820..17816049hypothetical protein
LOC_Os11g31400Os.12618.1.S1_at10/1111+17818820..17819726expressed protein
LOC_Os11g31410OsAffx.25952.1.S1_s_at2/1111+17827401..17833264retrotransposon protein, putative, unclassified
LOC_Os11g31420OsAffx.31243.1.S1_at11/1111+17834991..17843229expressed protein
LOC_Os11g31420OsAffx.22566.1.S1_x_at2/1111+17834991..17843229expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7266.1.S1_at--766--711Chr11:17812225..17812249 (25 bp)
ATGATCGGGCACATCGCGTGGAACC
LOC_Os11g31390
OsAffx.7266.1.S1_at--529--8231Chr11:17812307..17812331 (25 bp)
GGCACACCCCGACACATGGTAGGAT
LOC_Os11g31390
OsAffx.7266.1.S1_at--557--7991Chr11:17812328..17812352 (25 bp)
GGATGAACCGCAGTGCAAGCACCTC
LOC_Os11g31390
OsAffx.7266.1.S1_at--1122--1111Chr11:17812339..17812363 (25 bp)
AGTGCAAGCACCTCGGCGAACGGAG
LOC_Os11g31390
OsAffx.7266.1.S1_at--1018--5771Chr11:17812405..17812429 (25 bp)
GACGAGGTCAACGACGCTACGCAGC
LOC_Os11g31390
OsAffx.7266.1.S1_at--907--9911Chr11:17812422..17812446 (25 bp)
TACGCAGCCCATCGTTGACTTGCAT
LOC_Os11g31390
OsAffx.7266.1.S1_at--832--10751Chr11:17812436..17812460 (25 bp)
TTGACTTGCATCTGGCATGTCCCAT
LOC_Os11g31390
OsAffx.7266.1.S1_at--528--8491Chr11:17812448..17812472 (25 bp)
TGGCATGTCCCATCGGCCAAGAAGG
LOC_Os11g31390
OsAffx.7266.1.S1_at--96--8111Chr11:17812480..17812504 (25 bp)
GGACCGCAGAAACCTCACCATGAGA
LOC_Os11g31390
OsAffx.7266.1.S1_at--408--2031NONE
ACTAGCAAGCGGCTGATACACCCAC
NONE
OsAffx.7266.1.S1_at--299--1391Chr11:17815916..17815940 (25 bp)
AGACCCGTGGTCGTGGCAATGTTAG
LOC_Os11g31390
Target Sequence 
ATGATCGGGCACATCGCGTGGAACCCTTGGCGCGTGGTGGAGATGGTTGCCGACGGTGTGGCCTGCATGAGATGGAGGGA
ACGGCACACCCCGACACATGGTAGGATGAACCGCAGTGCAAGCACCTCGGCGAACGGAGGACACCAGCCGCTGCATCGAC
CTTCCCCCGCCGCCGCCGCCGACGAGGTCAACGACGCTACGCAGCCCATCGTTGACTTGCATCTGGCATGTCCCATCGGC
CAAGAAGGCGGCGATGGACCGCAGAAACCTCACCATGAGAACGTCCCGTTCCCCGTCACTAGCAAGCGGCTGATACACCC
ACCCCCGTGCTCACGGCGGCGTATGTGGCCACCCCCAGGCGCGCAGCAGCAGGTCCACACGCCCCGATGCTCGCGGTGGT
GGATCCAGACCCGTGGTCGTGGCAATGTTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7266.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis