Browse Element(s) Details


OsAffx.31243.1.S1_at

Description tigr:9639.m02851
TID=OsAffx.31243.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3142011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g31380OsAffx.7265.1.S1_at10/1111+17809082..17810981No apical meristem protein
LOC_Os11g31390OsAffx.7266.1.S1_at10/1111+17811820..17816049hypothetical protein
LOC_Os11g31390OsAffx.17205.1.S1_at1/1111+17811820..17816049hypothetical protein
LOC_Os11g31400Os.12618.1.S1_at10/1111+17818820..17819726expressed protein
LOC_Os11g31410OsAffx.25952.1.S1_s_at2/1111+17827401..17833264retrotransposon protein, putative, unclassified
LOC_Os11g31420OsAffx.31243.1.S1_at11/1111+17834991..17843229expressed protein
LOC_Os11g31420OsAffx.22566.1.S1_x_at2/1111+17834991..17843229expressed protein
LOC_Os11g31430Os.57435.1.S1_x_at11/1111+17847752..17861778expressed protein
LOC_Os11g31430Os.9446.1.S1_at11/1111+17847752..17861778expressed protein
LOC_Os11g31430OsAffx.19102.1.S1_at10/1111+17847752..17861778expressed protein
LOC_Os11g31430Os.10185.1.S1_at5/1111+17847752..17861778expressed protein
LOC_Os11g31430OsAffx.21108.1.S1_x_at1/1111+17847752..17861778expressed protein
LOC_Os11g31440OsAffx.4416.1.S1_at1/1111+17867691..17869536hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31243.1.S1_at--516--9831Chr11:17836424..17836448 (25 bp)
TAAAAACCTTGGACTTCACGCAGAA
LOC_Os11g31420
OsAffx.31243.1.S1_at--997--7951Chr11:17836414..17836438 (25 bp)
GGACTTCACGCAGAACTAAACCATT
LOC_Os11g31420
OsAffx.31243.1.S1_at--85--8511Chr11:17836203..17836227 (25 bp)
TGGCACTATAACAACGATGAGGCAA
LOC_Os11g31420
OsAffx.31243.1.S1_at--450--2251Chr11:17836178..17836202 (25 bp)
AAATATCCCAGCTTAAGCTTAGAGC
LOC_Os11g31420
OsAffx.31243.1.S1_at--325--2711Chr11:17836164..17836188 (25 bp)
AAGCTTAGAGCATCTCTTGGTCTCA
LOC_Os11g31420
OsAffx.31243.1.S1_at--626--9511Chr11:17836152..17836176 (25 bp)
TCTCTTGGTCTCAAAAGCTGCATTG
LOC_Os11g31420
OsAffx.31243.1.S1_at--31--8771Chr11:17836070..17836094 (25 bp)
TGTATAACTCCTTATTCTTCCTCAG
LOC_Os11g31420
OsAffx.31243.1.S1_at--1057--111Chr11:17836057..17836081 (25 bp)
ATTCTTCCTCAGAGTTTACATGGTT
LOC_Os11g31420
OsAffx.31243.1.S1_at--785--2111Chr11:17836040..17836064 (25 bp)
ACATGGTTGCACACCGAGACGATTT
LOC_Os11g31420
OsAffx.31243.1.S1_at--867--4771Chr11:17835558..17835582 (25 bp)
GCTGCTGATGAAAGAGTGCCCTACA
LOC_Os11g31420
OsAffx.31243.1.S1_at--423--171Chr11:17835227..17835501 (25 bp)
ATTTTTGCGGACTGCTCTTAGGAAA
LOC_Os11g31420
Target Sequence 
TAAAAACCTTGGACTTCACGCAGAACTAAACCATTTTGCTGAACTTCTTGGGAAAAAAACAGTAAAGTATGAAGATCTGG
TGTGGGAAGCTGGATTATGGGAACATAACAGCAAAGTGCAATTTATCAGGGAGATATATTGGCACTATAACAACGATGAG
GCAAAAATATCCCAGCTTAAGCTTAGAGCATCTCTTGGTCTCAAAAGCTGCATTGACAAGTTGGAGGTGAACAAATCAAG
AGAGCCAAACAAAGAAATCAATGACAAAAGCTTGTATAACTCCTTATTCTTCCTCAGAGTTTACATGGTTGCACACCGAG
ACGATTTAATCAAAGGATACAGTGGAGCAAAGGAAACAGTGGAGGACAGGAAAGCCGTTGTGAGGCTGCTGATGAAAGAG
TGCCCTACATATATGGTGAAACTCATTGCAGAAATACGTCATTTAGGCTGGATTAAGGAATCACCATTTTTGCGGACTGC
TCTTAGGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31243.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis