Browse Element(s) Details


OsAffx.7265.1.S1_at

Description tigr:9639.m02847
TID=OsAffx.7265.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3138010/11No apical meristem protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g31330Os.8380.1.S1_at11/1111+17785637..17787999No apical meristem protein, expressed
LOC_Os11g31340OsAffx.19101.1.S1_at10/1111+17791770..17793856No apical meristem protein
LOC_Os11g31349NANA11+17795597..17796810NA
LOC_Os11g31360OsAffx.7264.1.S1_at11/1111+17798605..17801063No apical meristem protein, expressed
LOC_Os11g31370OsAffx.31242.1.S1_at11/1111+17804544..17805316hypothetical protein
LOC_Os11g31380OsAffx.7265.1.S1_at10/1111+17809082..17810981No apical meristem protein
LOC_Os11g31390OsAffx.7266.1.S1_at10/1111+17811820..17816049hypothetical protein
LOC_Os11g31390OsAffx.17205.1.S1_at1/1111+17811820..17816049hypothetical protein
LOC_Os11g31400Os.12618.1.S1_at10/1111+17818820..17819726expressed protein
LOC_Os11g31410OsAffx.25952.1.S1_s_at2/1111+17827401..17833264retrotransposon protein, putative, unclassified
LOC_Os11g31420OsAffx.31243.1.S1_at11/1111+17834991..17843229expressed protein
LOC_Os11g31420OsAffx.22566.1.S1_x_at2/1111+17834991..17843229expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7265.1.S1_at--193--8131NONE
GGACATCGTCCCAGGCTCAGAAAAG
NONE
OsAffx.7265.1.S1_at--599--8091Chr11:17809604..17809628 (25 bp)
GGCGCACCCTAACATTTTACTTTGG
LOC_Os11g31380
OsAffx.7265.1.S1_at--718--9891Chr11:17809621..17809645 (25 bp)
TACTTTGGGAATTCACGGACCGCAG
LOC_Os11g31380
OsAffx.7265.1.S1_at--514--2731Chr11:17809667..17809691 (25 bp)
AAGAATTTCGCCTTGCTGGCAATGG
LOC_Os11g31380
OsAffx.7265.1.S1_at--1102--811Chr11:17810653..17810677 (25 bp)
ATGGTCTCTCTGCAGTTCTTCGTAA
LOC_Os11g31380
OsAffx.7265.1.S1_at--634--5551Chr11:17810703..17810727 (25 bp)
GAAACCGTTGTCGAACCTGATGGAT
LOC_Os11g31380
OsAffx.7265.1.S1_at--223--8851Chr11:17810734..17810758 (25 bp)
TGATCTGCCGCATCTACAGGACAAG
LOC_Os11g31380
OsAffx.7265.1.S1_at--216--5071Chr11:17810759..17810783 (25 bp)
GCAGCGTGCATTGCCTGTTATCACT
LOC_Os11g31380
OsAffx.7265.1.S1_at--409--391Chr11:17810778..17810802 (25 bp)
ATCACTCCTCCTGCCATAGAAAATG
LOC_Os11g31380
OsAffx.7265.1.S1_at--1052--2871Chr11:17810840..17810864 (25 bp)
AAGGGAGGCTCAAGTCCGCTTTATT
LOC_Os11g31380
OsAffx.7265.1.S1_at--1104--3851Chr11:17810906..17810930 (25 bp)
CTGTAGTTGTATAGTTGGCCCCTCT
LOC_Os11g31380
Target Sequence 
GGACATCGTCCCAGGCTCAGAAAAGCCAGTCTACTACAACCAGGGAGGTGGCAGCGACTGCATGCTGGTGGGAATGAGGC
GCACCCTAACATTTTACTTTGGGAATTCACGGACCGCAGAGCGCACAAAATGGGGTATGCAAGAATTTCGCCTTGCTGGC
AATGGTCTTTCGCCTTACCCTGCGATGAAGCATGCCACCGGGGATGGCTCAAAACCACCCTGCAACTGTGCCGAAACAAC
CATCGCCAAGAGAAATGATGGTCTCTCTGCAGTTCTTCGTAATGTGCTCGCCGTCACCCCCCTTGTGGAAACCGTTGTCG
AACCTGATGGATCATGGCTGATCTGCCGCATCTACAGGACAAGGCAGCGTGCATTGCCTGTTATCACTCCTCCTGCCATA
GAAAATGCAAGGGAAATCATTATCCCTCCTGCCAATGGCAATGCAAGGGAGGCTCAAGTCCGCTTTATTGACTTCCTGCA
GCAGGGATCGCACATTGAGTCATCCTCCCCCTGTAGTTGTATAGTTGGCCCCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7265.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis