Browse Element(s) Details


Os.12618.1.S1_at

Description gb:AK064740.1
DB_XREF= gi:32974758
TID=Os.12618.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12618 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-120-D06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-120-D06, full insert sequence.
FL= gb:AK064740.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3140010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g31340OsAffx.19101.1.S1_at10/1111+17791770..17793856No apical meristem protein
LOC_Os11g31349NANA11+17795597..17796810NA
LOC_Os11g31360OsAffx.7264.1.S1_at11/1111+17798605..17801063No apical meristem protein, expressed
LOC_Os11g31370OsAffx.31242.1.S1_at11/1111+17804544..17805316hypothetical protein
LOC_Os11g31380OsAffx.7265.1.S1_at10/1111+17809082..17810981No apical meristem protein
LOC_Os11g31390OsAffx.7266.1.S1_at10/1111+17811820..17816049hypothetical protein
LOC_Os11g31390OsAffx.17205.1.S1_at1/1111+17811820..17816049hypothetical protein
LOC_Os11g31400Os.12618.1.S1_at10/1111+17818820..17819726expressed protein
LOC_Os11g31410OsAffx.25952.1.S1_s_at2/1111+17827401..17833264retrotransposon protein, putative, unclassified
LOC_Os11g31420OsAffx.31243.1.S1_at11/1111+17834991..17843229expressed protein
LOC_Os11g31420OsAffx.22566.1.S1_x_at2/1111+17834991..17843229expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12618.1.S1_at--309--4451Chr11:17819173..17819197 (25 bp)
GCCTTCGGCGAACATCGAGGTCAAG
LOC_Os11g31400
Os.12618.1.S1_at--757--6151Chr11:17819189..17819213 (25 bp)
GAGGTCAAGCACCAACAACGCAAAT
LOC_Os11g31400
Os.12618.1.S1_at--253--6411Chr11:17819216..17819240 (25 bp)
GATCTGTGGATGAACTCCTGGAACT
LOC_Os11g31400
Os.12618.1.S1_at--756--9931Chr11:17819242..17819411 (25 bp)
TTATCAATGCAGTGCGGGCCTACAA
LOC_Os11g31400
Os.12618.1.S1_at--708--5491Chr11:17819414..17819438 (25 bp)
GAACAAATTATACCCCTAAGGAATG
LOC_Os11g31400
Os.12618.1.S1_at--252--811Chr11:17819452..17819476 (25 bp)
ATGGGTTATTAATCAGGAGCTGCAA
LOC_Os11g31400
Os.12618.1.S1_at--323--6671Chr11:17819517..17819541 (25 bp)
GTTGCTTTTCCTCGGCTGTTATATC
LOC_Os11g31400
Os.12618.1.S1_at--877--751NONE
ATGTCAAGCAGATTCCCAATCATGG
NONE
Os.12618.1.S1_at--1104--5991Chr11:17819612..17819636 (25 bp)
GAGAGCATAACGCACTAGTCCCTGG
LOC_Os11g31400
Os.12618.1.S1_at--1069--10051Chr11:17819627..17819651 (25 bp)
TAGTCCCTGGAGAATTCATCGTAGC
LOC_Os11g31400
Os.12618.1.S1_at--4--5211Chr11:17819638..17819662 (25 bp)
GAATTCATCGTAGCAGTTGTACCAA
LOC_Os11g31400
Target Sequence 
GCCTTCGGCGAACATCGAGGTCAAGCACCAACAACGCAAATATGATCTGTGGATGAACTCCTGGAACTNTTATCAATGCA
GTGCGGGCCTACAAAAGAACAAATTATACCCCTAAGGAATGAGAGATGAATCAGATGGGTTATTAATCAGGAGCTGCAAG
CAAATTAGGCGTTAAATCCACGACCTTTTTCGCCTNGTTCGTTGCTTTTCCTCGGCTGTTATATCTCCAGGGATCAAAGA
TGAAGAAAAAAAATAACTTCTGATGATATATATGTCAAGCAGATTCCCAATCATGGAGAGCATAACGCACTAGTCCCTGG
AGAATTCATCGTAGCAGTTGTACCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12618.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis