Browse Element(s) Details


OsAffx.19101.1.S1_at

Description tigr:9639.m02843
TID=OsAffx.19101.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3134010/11No apical meristem protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g31330Os.8380.1.S1_at11/1111+17785637..17787999No apical meristem protein, expressed
LOC_Os11g31340OsAffx.19101.1.S1_at10/1111+17791770..17793856No apical meristem protein
LOC_Os11g31349NANA11+17795597..17796810NA
LOC_Os11g31360OsAffx.7264.1.S1_at11/1111+17798605..17801063No apical meristem protein, expressed
LOC_Os11g31370OsAffx.31242.1.S1_at11/1111+17804544..17805316hypothetical protein
LOC_Os11g31380OsAffx.7265.1.S1_at10/1111+17809082..17810981No apical meristem protein
LOC_Os11g31390OsAffx.7266.1.S1_at10/1111+17811820..17816049hypothetical protein
LOC_Os11g31390OsAffx.17205.1.S1_at1/1111+17811820..17816049hypothetical protein
LOC_Os11g31400Os.12618.1.S1_at10/1111+17818820..17819726expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19101.1.S1_at--732--4411Chr11:17792214..17792238 (25 bp)
GCCAGTAGGCTCAGAGGTGCCGATA
LOC_Os11g31340
OsAffx.19101.1.S1_at--1122--6311Chr11:17792280..17792304 (25 bp)
GATGAAGCGCACCTTGGTATTCCAC
LOC_Os11g31340
OsAffx.19101.1.S1_at--477--9931Chr11:17792305..17792329 (25 bp)
TACGGGAATTCTTCGTCCGCAAAGC
LOC_Os11g31340
OsAffx.19101.1.S1_at--939--7751Chr11:17792340..17792364 (25 bp)
GGTGATGCAGGAGTTCCGACTTGCT
LOC_Os11g31340
OsAffx.19101.1.S1_at--657--10691Chr11:17792360..17792384 (25 bp)
TTGCTGGTGCTACCCTTATACCTTG
LOC_Os11g31340
OsAffx.19101.1.S1_at--84--8671Chr11:17792388..17792412 (25 bp)
TGTGACGAGGCCAGCCACCGGTGAT
LOC_Os11g31340
OsAffx.19101.1.S1_at--787--2591NONE
AACGACCATCGCCACGGAAAACAAT
NONE
OsAffx.19101.1.S1_at--1088--8511Chr11:17793565..17793589 (25 bp)
TGGACAAACTCATGGCCCACTTGAG
LOC_Os11g31340
OsAffx.19101.1.S1_at--563--2631Chr11:17793603..17793627 (25 bp)
AACCTGATAGTTCTTTGCGGATATG
LOC_Os11g31340
OsAffx.19101.1.S1_at--1042--1451Chr11:17793639..17793663 (25 bp)
AGAAGAGGCAACGAACACCACAGTT
LOC_Os11g31340
OsAffx.19101.1.S1_at--12--4331Chr11:17793678..17793702 (25 bp)
CCATTGGCGATGCAAGGGAACTCAT
LOC_Os11g31340
Target Sequence 
GCCAGTAGGCTCAGAGGTGCCGATATATCACAAACGTAGTGGTGGCGCTGATGAAGCACTGGTGGGGATGAAGCGCACCT
TGGTATTCCACTACGGGAATTCTTCGTCCGCAAAGCGCACCGAATGGGTGATGCAGGAGTTCCGACTTGCTGGTGCTACC
CTTATACCTTGCCCTGTGACGAGGCCAGCCACCGGTGATGGCTCCATGCTTCCCTGCCACCGCACAGGAACGACCATCGC
CACGGAAAACAATGGAAGTCCATCAGCTGGACAAACTCATGGCCCACTTGAGAAAACCATGGTCGAACCTGATAGTTCTT
TGCGGATATGTCGCATCTACAAGAAGAGGCAACGAACACCACAGTTCATCATCCCTCCATCCATTGGCGATGCAAGGGAA
CTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19101.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis