Browse Element(s) Details


OsAffx.22566.1.S1_x_at

Description gb:NM_185719.1
DB_XREF= gi:34898523
GEN=OJ1612_A04.19
TID=OsAffx.22566.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OJ1612_A04.19 (OJ1612_A04.19), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g314202/11expressed protein
LOC_Os08g262101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g31380OsAffx.7265.1.S1_at10/1111+17809082..17810981No apical meristem protein
LOC_Os11g31390OsAffx.7266.1.S1_at10/1111+17811820..17816049hypothetical protein
LOC_Os11g31390OsAffx.17205.1.S1_at1/1111+17811820..17816049hypothetical protein
LOC_Os11g31400Os.12618.1.S1_at10/1111+17818820..17819726expressed protein
LOC_Os11g31410OsAffx.25952.1.S1_s_at2/1111+17827401..17833264retrotransposon protein, putative, unclassified
LOC_Os11g31420OsAffx.31243.1.S1_at11/1111+17834991..17843229expressed protein
LOC_Os11g31420OsAffx.22566.1.S1_x_at2/1111+17834991..17843229expressed protein
LOC_Os11g31430Os.57435.1.S1_x_at11/1111+17847752..17861778expressed protein
LOC_Os11g31430Os.9446.1.S1_at11/1111+17847752..17861778expressed protein
LOC_Os11g31430OsAffx.19102.1.S1_at10/1111+17847752..17861778expressed protein
LOC_Os11g31430Os.10185.1.S1_at5/1111+17847752..17861778expressed protein
LOC_Os11g31430OsAffx.21108.1.S1_x_at1/1111+17847752..17861778expressed protein
LOC_Os11g31440OsAffx.4416.1.S1_at1/1111+17867691..17869536hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22566.1.S1_x_at--518--10611Chr07:21696816..21696840 (25 bp)
TTCCCGGGCAGGATTATCCCCGGAT
NONE
OsAffx.22566.1.S1_x_at--949--6532Chr06:20317715..20317736 (22 bp)
GATTATCCCCGGATCCATCATCACG
NONE
OsAffx.22566.1.S1_x_at--33--7971Chr07:21696795..21696819 (25 bp)
GGATCCATCATCACGCCGGATACGC
NONE
OsAffx.22566.1.S1_x_at--1092--7938Chr08:7102738..7102942 (25 bp)
GGATACGCCCTACCATGGCCGGATC
NONE
OsAffx.22566.1.S1_x_at--622--9971Chr07:21696768..21696792 (25 bp)
TACCATGGCCGGATCCGCGCGCGTG
NONE
OsAffx.22566.1.S1_x_at--252--4151Chr07:21696670..21696694 (25 bp)
CGCCGTGTCGTACCGGATCCGTCGA
NONE
OsAffx.22566.1.S1_x_at--1162--8691Chr07:21696665..21696689 (25 bp)
TGTCGTACCGGATCCGTCGACGTCG
NONE
OsAffx.22566.1.S1_x_at--749--4794Chr12:23826944..23826978 (25 bp)
GCTCGGCAGTGGAGGTGGCGCTCGA
NONE
OsAffx.22566.1.S1_x_at--818--7451Chr07:21696588..21696612 (25 bp)
GTGTCGTGCCGGATCCGCCCAATGC
NONE
OsAffx.22566.1.S1_x_at--1089--4515Chr06:20317984..20318008 (25 bp)
GCCGCTCTCATCTCCGAAAAAATAG
NONE
OsAffx.22566.1.S1_x_at--23--291Chr07:21696515..21696539 (25 bp)
ATAGGATCTACATATGTGGTTGGTT
NONE
Target Sequence 
TTCCCGGGCAGGATTATCCCCGGATCCATCATCACGCCGGATACGCCCTACCATGGCCGGATCCGCGCGCGTGGGGCGTA
GATCGGCGGCTGGGTGCGCCGCCTCGTCGCCTCCTACACGCCGTCAACCGTCGCCTCCACGCCTGCCGCCGTGTCGTACC
GGATCCGTCGACGTCGCGCCCGCCGCCGCTCGGCAGTGGAGGTGGCGCTCGACGTCGCGCCGCCAGCCGTGTCGTGCCGG
ATCCGCCCAATGCCGCCACCACTCGCCGCCACGCCCGCTCGCCGCTCTCATCTCCGAAAAAATAGGATCTACATATGTGG
TTGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22566.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis