Browse Element(s) Details


Os.8423.1.S1_a_at

Description gb:AY434735.1
DB_XREF= gi:38112689
GEN=ETR3
TID=Os.8423.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8423 (NCBI UniGene Cluster)
DEF=Oryza sativa (indica cultivar-group) putative ethylene receptor (ETR3) mRNA, complete cds.
PROD=putative ethylene receptor
FL= gb:AF420318.2 gb:AY434735.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5753011/11His Kinase A domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g57490Os.7342.1.S1_at11/112+35221429..35222740expressed protein
LOC_Os02g57500Os.7461.1.S1_at11/112+35224869..35228093expressed protein
LOC_Os02g57510Os.8459.1.S1_at10/112+35228257..35232158BS14b, putative, expressed
LOC_Os02g57510Os.50252.1.S1_x_at1/112+35228257..35232158BS14b, putative, expressed
LOC_Os02g57520OsAffx.3095.1.S1_at11/112+35236753..35237943DNA-binding protein, putative, expressed
LOC_Os02g57530Os.8423.1.S1_a_at11/112+35245712..35249336His Kinase A domain containing protein, expressed
LOC_Os02g57540Os.6282.1.S1_at11/112+35250300..35252362Ribosomal L28e protein family protein, expressed
LOC_Os02g57540Os.7054.1.S1_a_at1/112+35250300..35252362Ribosomal L28e protein family protein, expressed
LOC_Os02g57540Os.7054.2.S1_x_at1/112+35250300..35252362Ribosomal L28e protein family protein, expressed
LOC_Os02g57550OsAffx.12680.1.S1_at11/112+35255389..35255976hypothetical protein
LOC_Os02g57560Os.49855.1.S1_at11/112+35257337..35259524Protein kinase domain containing protein, expressed
LOC_Os02g57560OsAffx.30454.1.S1_x_at1/112+35257337..35259524Protein kinase domain containing protein, expressed
LOC_Os02g57570OsAffx.24906.1.S1_x_at11/112+35261791..35262961MatE family protein
LOC_Os02g57570OsAffx.24906.1.S1_at11/112+35261791..35262961MatE family protein
LOC_Os02g57580OsAffx.24907.1.S1_at11/112+35263349..35264388hypothetical protein
LOC_Os02g57580Os.9626.2.S1_x_at1/112+35263349..35264388hypothetical protein
LOC_Os02g57590Os.53192.1.S1_s_at11/112+35265730..35268909Fibrillarin-2, putative, expressed
LOC_Os02g57590Os.47666.1.S1_at11/112+35265730..35268909Fibrillarin-2, putative, expressed
LOC_Os02g57600Os.10392.1.S1_at11/112+35269321..35272692expressed protein
LOC_Os02g57600OsAffx.31551.1.S1_at1/112+35269321..35272692expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009408biological_processresponse to heat
GO:0009625biological_processresponse to insect
GO:0009690biological_processcytokinin metabolism
GO:0009727biological_processdetection of ethylene stimulus
GO:0009733biological_processresponse to auxin stimulus
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009739biological_processresponse to gibberellic acid stimulus
GO:0009871biological_processjasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway
GO:0010105biological_processnegative regulation of ethylene mediated signaling pathway
GO:0010182biological_processsugar mediated signaling
GO:0005783cellular_componentendoplasmic reticulum
GO:0005789cellular_componentendoplasmic reticulum membrane
GO:0000156molecular_functiontwo-component response regulator activity
GO:0004673molecular_functionprotein histidine kinase activity
GO:0004696molecular_functionglycogen synthase kinase 3 activity
GO:0004872molecular_functionreceptor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8423.1.S1_a_at--48--1471Chr02:35248778..35248802 (25 bp)
AGAAGTGCGCTCAATCCGGGATCAA
LOC_Os02g57530
Os.8423.1.S1_a_at--756--851Chr02:35248802..35248826 (25 bp)
ATGGCATCCTCAAGAAGCCGGTGAT
LOC_Os02g57530
Os.8423.1.S1_a_at--666--1671Chr02:35248817..35248841 (25 bp)
AGCCGGTGATTCTGCAGGAGTTGAA
LOC_Os02g57530
Os.8423.1.S1_a_at--848--5891Chr02:35248846..35248870 (25 bp)
GAGCTGGCGCGAATTCTTCAGAGCA
LOC_Os02g57530
Os.8423.1.S1_a_at--190--8031Chr02:35248890..35248914 (25 bp)
GGAGGTCTGTTTGTCTAAGAGCTCT
LOC_Os02g57530
Os.8423.1.S1_a_at--688--2351Chr02:35248931..35248955 (25 bp)
AAAGCTGTGAATCCTGTGATCAGTG
LOC_Os02g57530
Os.8423.1.S1_a_at--1108--4271Chr02:35248961..35248985 (25 bp)
CCTCGTCATCCAGCATTGAAGAATG
LOC_Os02g57530
Os.8423.1.S1_a_at--457--411Chr02:35249008..35249032 (25 bp)
ATCAGTGTACAATCTCGTCATCCAG
LOC_Os02g57530
Os.8423.1.S1_a_at--105--3072Chr02:35249018..35249042 (25 bp)
AATCTCGTCATCCAGCATTGCAGAA
LOC_Os02g57530
Os.8423.1.S1_a_at--1135--5491Chr02:35249120..35249144 (25 bp)
GAACACATGGAATCTTGGCAGCAAT
LOC_Os02g57530
Os.8423.1.S1_a_at--746--3411Chr02:35249138..35249162 (25 bp)
CAGCAATGGCGTCCCCGAGAAATCT
LOC_Os02g57530
Target Sequence 
AGAAGTGCGCTCAATCCGGGATCAATGGCATCCTCAAGAAGCCGGTGATTCTGCAGGAGTTGAAAGACGAGCTGGCGCGA
ATTCTTCAGAGCACATGATGCTGTTTGCTGGAGGTCTGTTTGTCTAAGAGCTCTGAAGTCTGAATCGGTAAAAGCTGTGA
ATCCTGTGATCAGTGTACAACCTCGTCATCCAGCATTGAAGAATGAAGAACTCAGAAGAATTCTGTGATCAGTGTACAAT
CTCGTCATCCAGCATTGCAGAATGAAGAACTCATAAGATCTTCGCGGCGAAAACGGGGAACATCTCTAACGAAAGAAAGG
GTGCCCTGATGGATGGCAAGAACACATGGAATCTTGGCAGCAATGGCGTCCCCGAGAAATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8423.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis