Browse Element(s) Details


Os.845.1.A1_at

Description gb:AK068846.1
DB_XREF= gi:32978871
TID=Os.845.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.845 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0409B08.15 (P0409B08.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013162I04, full insert sequence.
FL= gb:AK068846.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0365010/11sufB/sufD domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g03620Os.29768.1.S1_at11/111+1483202..1485699Multicopper oxidase family protein, expressed
LOC_Os01g03630Os.31788.1.S1_at11/111+1487296..1489948Multicopper oxidase family protein, expressed
LOC_Os01g03630Os.18067.1.S1_at1/111+1487296..1489948Multicopper oxidase family protein, expressed
LOC_Os01g03640OsAffx.10896.1.S1_at11/111+1494345..1497143Multicopper oxidase family protein, expressed
LOC_Os01g03650Os.845.1.A1_at10/111+1500813..1504859sufB/sufD domain containing protein, expressed
LOC_Os01g03650Os.845.2.A1_x_at9/111+1500813..1504859sufB/sufD domain containing protein, expressed
LOC_Os01g03650Os.845.2.A1_at5/111+1500813..1504859sufB/sufD domain containing protein, expressed
LOC_Os01g03660Os.18008.1.S1_at10/111+1505037..1509554Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g03660OsAffx.23102.1.S1_at10/111+1505037..1509554Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g03670Os.20305.1.S1_at11/111+1509940..1511264NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os01g03680Os.5045.1.S1_at11/111+1512639..1513529Bowman-Birk serine protease inhibitor family protein, expressed
LOC_Os01g03690Os.53501.1.S1_at11/111+1515049..1518438serine/threonine-protein kinase receptor precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0010027biological_processthylakoid membrane organization and biogenesis
GO:0009536cellular_componentplastid
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.845.1.A1_at--274--3271Chr01:1501046..1501070 (25 bp)
CAAAACGACGAATGAGGCCCTCATT
LOC_Os01g03650
Os.845.1.A1_at--547--8411Chr01:1501031..1501055 (25 bp)
GGCCCTCATTATTGTTATGGAGCCA
LOC_Os01g03650
Os.845.1.A1_at--850--8531Chr01:1501014..1501038 (25 bp)
TGGAGCCAGTTCAACATTTTTCTTT
LOC_Os01g03650
Os.845.1.A1_at--569--10011Chr01:1500960..1500984 (25 bp)
TAGAAGATTTTTGGTGAAACACGAC
LOC_Os01g03650
Os.845.1.A1_at--486--5531Chr01:1500945..1500969 (25 bp)
GAAACACGACGAGAAACAGATAACT
LOC_Os01g03650
Os.845.1.A1_at--912--3431Chr01:1500929..1500953 (25 bp)
CAGATAACTGTTTTGCAATGTCAAG
LOC_Os01g03650
Os.845.1.A1_at--138--7091Chr01:1500910..1500934 (25 bp)
GTCAAGAGTGATGTTATTCTAGCAT
LOC_Os01g03650
Os.845.1.A1_at--739--6791Chr01:1500898..1500922 (25 bp)
GTTATTCTAGCATGTAAAGTCAGTT
LOC_Os01g03650
Os.845.1.A1_at--138--471Chr01:1500881..1500905 (25 bp)
AGTCAGTTAATTTGTGAACCACTTG
LOC_Os01g03650
Os.845.1.A1_at--335--5431Chr01:1500866..1500890 (25 bp)
GAACCACTTGTTCATTACATGTTGA
LOC_Os01g03650
Os.845.1.A1_at--573--7391NONE
GTGAGGCAGATTATAAATCTTTGCT
NONE
Target Sequence 
CAAAACGACGAATGAGGCCCTCATTATTGTTATGGAGCCAGTTCAACATTTTTCTTTTATCAAAATGAGAAATATAGAAA
GAACATTAGAAGATTTTTGGTGAAACACGACGAGAAACAGATAACTGTTTTGCAATGTCAAGAGTGATGTTATTCTAGCA
TGTAAAGTCAGTTAATTTGTGAACCACTTGTTCATTACATGTTGAATCAAGCATNCATGATGNTTGTGAGGCAGATTATA
AATCTTTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.845.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis