Browse Element(s) Details


Os.8566.1.S1_at

Description gb:AK072012.1
DB_XREF= gi:32982035
TID=Os.8566.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.8566 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033092C04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013100A22, full insert sequence.
FL= gb:AK102382.1 gb:AK063129.1 gb:AK072012.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3885011/11UbiA prenyltransferase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g38800Os.12660.1.S2_at11/117+23276784..23279409lectin receptor kinase 7, putative, expressed
LOC_Os07g38800Os.12660.1.S1_at11/117+23276784..23279409lectin receptor kinase 7, putative, expressed
LOC_Os07g38810Os.17201.1.S1_at11/117+23280907..23283254lectin protein kinase, putative, expressed
LOC_Os07g38820OsAffx.28817.1.S1_at11/117+23287584..23290095Lectin receptor-type protein kinase, putative
LOC_Os07g38830Os.27477.1.S1_at11/117+23291668..23295109hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os07g38840Os.16563.1.S1_at11/117+23297351..23300519pre-mRNA processing protein PRP39, putative, expressed
LOC_Os07g38850Os.8566.1.S1_at11/117+23300758..23308009UbiA prenyltransferase family protein, putative, expressed
LOC_Os07g38860NANA7+23312788..23317460indole-3-acetic acid-amido synthetase GH3.1, putative
LOC_Os07g38870OsAffx.16619.1.S1_at11/117+23320550..23321350hypothetical protein
LOC_Os07g38880NANA7+23322811..23323176hypothetical protein
LOC_Os07g38890Os.54822.1.S1_at11/117+23323505..23325533indole-3-acetic acid-amido synthetase GH3.1, putative, expressed
LOC_Os07g38900Os.28814.2.S1_x_at1/117+23326517..23327484hypothetical protein
LOC_Os07g38910OsAffx.5571.1.S1_at11/117+23328327..23329152histidine kinase 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0010189biological_processvitamin E biosynthesis
GO:0042362biological_processfat-soluble vitamin biosynthesis
GO:0009507cellular_componentchloroplast
GO:0004659molecular_functionprenyltransferase activity
GO:0010176molecular_functionhomogentisate phytyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8566.1.S1_at--747--811Chr07:23307449..23307473 (25 bp)
ATGGTCTGCATGTTGAGTGCGGCAA
LOC_Os07g38850
Os.8566.1.S1_at--745--8191Chr07:23307528..23307552 (25 bp)
GGAAGACTCTGATAACTCTCTCTCG
LOC_Os07g38850
Os.8566.1.S1_at--374--10691Chr07:23307623..23307647 (25 bp)
TTGCTACTGGGATCCTTAAAGGCTT
LOC_Os07g38850
Os.8566.1.S1_at--1142--7491Chr07:23307651..23307675 (25 bp)
GTGGTCACCAGTGGAATGTGCCTTA
LOC_Os07g38850
Os.8566.1.S1_at--1135--1011Chr07:23307760..23307784 (25 bp)
AGGTCTGGTCACACAACGGGTAGTA
LOC_Os07g38850
Os.8566.1.S1_at--18--5871Chr07:23307791..23307815 (25 bp)
GAGCGGCAAAAGACGACCTTGTTTT
LOC_Os07g38850
Os.8566.1.S1_at--1061--10471Chr07:23307832..23307856 (25 bp)
TTAACTCTAGTTTTCATGTGACCAC
LOC_Os07g38850
Os.8566.1.S1_at--700--771Chr07:23307847..23307871 (25 bp)
ATGTGACCACTTACCTTGAGAGTTG
LOC_Os07g38850
Os.8566.1.S1_at--330--831Chr07:23307877..23307901 (25 bp)
ATGGAATCACTTGTCGACTCCTCGG
LOC_Os07g38850
Os.8566.1.S1_at--716--5711Chr07:23307892..23307916 (25 bp)
GACTCCTCGGCTTGTATATTTCTAG
LOC_Os07g38850
Os.8566.1.S1_at--671--9492Chr07:23307932..23307956 (25 bp)
TCTCCTCCACACTTGTACTTGAAGA
LOC_Os07g38850
Target Sequence 
ATGGTCTGCATGTTGAGTGCGGCAAAAACTAGAAGCCCATATGAACAGTGGGAGTAAGGGAACGAACATGCCATCCATGG
GAAGACTCTGATAACTCTCTCTCGCCCGGGCTGTAAAGGGTAAGCACTGTTGTGCATATATATGAAAGGAAGGTGATAAA
GCAGGGATGCTAAATTGCTACTGGGATCCTTAAAGGCTTATAGTGGTCACCAGTGGAATGTGCCTTAATAATTTGGTTAC
CTAGCAGAGCAAGTTTTTGCAGGTTATTAGGTAATATCTTTGAGGGAATGAACTTAGATTTCATTGTTTTAAGGTCTGGT
CACACAACGGGTAGTAGTTCTGGAGCGGCAAAAGACGACCTTGTTTTACACTACCAAGGGAGGTTAACTCTAGTTTTCAT
GTGACCACTTACCTTGAGAGTTGAGACCATGGAATCACTTGTCGACTCCTCGGCTTGTATATTTCTAGTGTCAGCATTTG
CATTCTCCTCCACACTTGTACTTGAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8566.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis