Browse Element(s) Details


Os.8570.4.S1_at

Description gb:AK060116.1
DB_XREF= gi:32970134
TID=Os.8570.4
CNT=14
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.8570 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-106-A06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-308-E08, full insert sequence.
FL= gb:AK060116.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3233011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g32300Os.15552.2.S1_x_at10/119+19279445..19285633KH domain containing protein, expressed
LOC_Os09g32310Os.53700.1.S1_at9/119+19286465..19289476expressed protein
LOC_Os09g32310OsAffx.6468.1.S1_x_at4/119+19286465..19289476expressed protein
LOC_Os09g32320Os.9801.1.S1_at11/119+19292346..19295663expressed protein
LOC_Os09g32330Os.8570.4.S1_at11/119+19302495..19304588expressed protein
LOC_Os09g32340OsAffx.17983.1.S1_at11/119+19319574..19319945hypothetical protein
LOC_Os09g32350OsAffx.30115.1.S1_at9/119+19320884..19322717hypothetical protein
LOC_Os09g32360Os.53975.1.S1_at11/119+19329487..19331512expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8570.4.S1_at--843--1871Chr09:19302985..19303009 (25 bp)
ACGATTCAGACGACGATGAGCGGCA
LOC_Os09g32330
Os.8570.4.S1_at--119--691Chr09:19302970..19302994 (25 bp)
ATGAGCGGCAGCACCGTGGCAAGAA
LOC_Os09g32330
Os.8570.4.S1_at--889--9671Chr09:19302892..19302916 (25 bp)
TCACCTTGCACACCCAGATGGGAGG
LOC_Os09g32330
Os.8570.4.S1_at--483--831Chr09:19302853..19302877 (25 bp)
ATGGAACATTCAGGTCGCCGAGGTC
LOC_Os09g32330
Os.8570.4.S1_at--534--9351Chr09:19302830..19302854 (25 bp)
TCGCTCTCACTGTCTGATCTTCAGA
LOC_Os09g32330
Os.8570.4.S1_at--1105--8351Chr09:19302800..19302824 (25 bp)
GGCGGTTCATGTTAGTTTGCTGCTA
LOC_Os09g32330
Os.8570.4.S1_at--242--3611Chr09:19302731..19302755 (25 bp)
CATTGATCTCCTTTTGGCTGGTAGA
LOC_Os09g32330
Os.8570.4.S1_at--872--6771Chr09:19302703..19302727 (25 bp)
GTTACTGCTACAACTGCTTACTATT
LOC_Os09g32330
Os.8570.4.S1_at--609--6571Chr09:19302614..19302638 (25 bp)
GATTCTAGTAACTCTCTGGTTTTTC
LOC_Os09g32330
Os.8570.4.S1_at--813--6811Chr09:19302596..19302620 (25 bp)
GTTTTTCTGAGTCCTGACCTGATTA
LOC_Os09g32330
Os.8570.4.S1_at--774--5451Chr09:19302541..19302565 (25 bp)
GAACTGACCTAACTTGAGGCTATCA
LOC_Os09g32330
Target Sequence 
ACGATTCAGACGACGATGAGCGGCAGCACCGTGGCAAGAACGGCGGCCGGCGAGAGTCGGCGGCGCCGCCATTGCCATTG
CCGCCGCCGAGGCTCACCTTGCACACCCAGATGGGAGGAATGGTGAGGAGGAATGGAACATTCAGGTCGCCGAGGTCGCT
CTCACTGTCTGATCTTCAGAACAGTGGCGGTTCATGTTAGTTTGCTGCTATTAGTACAAAAAAAATAATAATTTTTACAG
TTAGAGCAAAAAGCCATTGATCTCCTTTTGGCTGGTAGAGTTGTTACTGCTACAACTGCTTACTATTAGTAACTATATAA
TTATAATTATAATTGCAATGCATAAGGTCCAAGTTTGTTGTGATCTACTATGATTCTAGTAACTCTCTGGTTTTTCTGAG
TCCTGACCTGATTAAGAAGACATGTATCAACTATGTATATCTATGAACTGACCTAACTTGAGGCTATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8570.4.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis