Browse Element(s) Details


Os.8639.1.S1_at

Description gb:AK063247.1
DB_XREF= gi:32973265
TID=Os.8639.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.8639 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-112-G12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-112-G12, full insert sequence.
FL= gb:AK063247.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2470011/11auxin-induced protein TGSAUR12, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g24670NANA2+14302634..14308271retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g24680Os.45161.1.A1_x_at6/112+14309077..14314123retrotransposon protein, putative, unclassified
LOC_Os02g24680OsAffx.22699.1.S1_x_at1/112+14309077..14314123retrotransposon protein, putative, unclassified
LOC_Os02g24690OsAffx.1196.1.S1_at2/112+14315756..14319332hypothetical protein
LOC_Os02g24690OsAffx.1196.1.S1_x_at1/112+14315756..14319332hypothetical protein
LOC_Os02g24700Os.8639.1.S1_at11/112+14327236..14328144auxin-induced protein TGSAUR12, putative, expressed
LOC_Os02g24710NANA2+14328976..14329413hypothetical protein
LOC_Os02g24720OsAffx.24410.1.S1_at10/112+14331198..14333118Nonspecific lipid-transfer protein 5 precursor, putative, expressed
LOC_Os02g24720OsAffx.24410.1.S1_x_at10/112+14331198..14333118Nonspecific lipid-transfer protein 5 precursor, putative, expressed
LOC_Os02g24720Os.28462.1.S1_s_at1/112+14331198..14333118Nonspecific lipid-transfer protein 5 precursor, putative, expressed
LOC_Os02g24720OsAffx.2442.1.S1_x_at1/112+14331198..14333118Nonspecific lipid-transfer protein 5 precursor, putative, expressed
LOC_Os02g24730NANA2+14335798..14341916retrotransposon protein, putative, unclassified
LOC_Os02g24740Os.23391.1.A1_at11/112+14349693..14350300Auxin-induced protein 10A5, putative, expressed
LOC_Os02g24750OsAffx.24411.1.S1_at10/112+14351070..14356277expressed protein
LOC_Os02g24750Os.53874.1.S1_at6/112+14351070..14356277expressed protein
LOC_Os02g24750Os.7074.1.S1_at4/112+14351070..14356277expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009733biological_processresponse to auxin stimulus
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8639.1.S1_at--495--1991Chr02:14327643..14327667 (25 bp)
ACTGCCTGAGTGACCGTTCAATCGA
LOC_Os02g24700
Os.8639.1.S1_at--1109--6291Chr02:14327666..14327690 (25 bp)
GATGAGGCGATCGACCACTTACCCG
LOC_Os02g24700
Os.8639.1.S1_at--283--1851Chr02:14327779..14327803 (25 bp)
ACGCAGTGGCAGTACGGCTGGCATT
LOC_Os02g24700
Os.8639.1.S1_at--385--6051Chr02:14327849..14327873 (25 bp)
GAGTTCCGGCCGGAAACCGATCAAT
LOC_Os02g24700
Os.8639.1.S1_at--113--1771Chr02:14327875..14327899 (25 bp)
ACCGGGCGGGTAGACTCTGCTTCAG
LOC_Os02g24700
Os.8639.1.S1_at--231--4911Chr02:14327927..14327951 (25 bp)
GCTTCTTGCTCGTGGGATTCTTTCA
LOC_Os02g24700
Os.8639.1.S1_at--661--6571Chr02:14327942..14327966 (25 bp)
GATTCTTTCACGAATTCTTGCCGGT
LOC_Os02g24700
Os.8639.1.S1_at--570--3151Chr02:14327954..14327978 (25 bp)
AATTCTTGCCGGTTCATGCAGCAAA
LOC_Os02g24700
Os.8639.1.S1_at--822--9531Chr02:14328001..14328025 (25 bp)
TCTAGCTTAGTGTACGTACGCGCGT
LOC_Os02g24700
Os.8639.1.S1_at--1014--6691Chr02:14328059..14328083 (25 bp)
GTTCCTCGAATGGTTTTGATCAAAT
LOC_Os02g24700
Os.8639.1.S1_at--334--3831Chr02:14328118..14328142 (25 bp)
CTGCCTGATGTGACCTTCTTGATAA
LOC_Os02g24700
Target Sequence 
ACTGCCTGAGTGACCGTTCAATCGATGAGGCGATCGACCACTTACCCGGCCGTCGTCNGTTGGTGGNCTGCCGCTTCCGG
CGCACGGTGCTGCAGCAGCTGCCCGGTCGCTCGGCCGGGGCACCAGAGATGCACGCACACGCAGTGGCAGTACGGCTGGC
ATTGGTTGGAGCTTGGTTGTGTAGTGTAGACCGGAAATGCAAACATGGGAGTTCCGGCCGGAAACCGATCAATCACCGGG
CGGGTAGACTCTGCTTCAGCTGCCCGGTGGCCGGTGGGGGTTCCGGGCTTCTTGCTCGTGGGATTCTTTCACGAATTCTT
GCCGGTTCATGCAGCAAAATTTGCTGCTTTTAGCTAGCTATCTAGCTTAGTGTACGTACGCGCGTATGTATATAATGCGG
AGACCAATTGATTGATTTGTTCCTCGAATGGTTTTGATCAAATGAAGGAGAACACCATTGCTCACCTCAGGCGCGCACTG
CCTGATGTGACCTTCTTGATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8639.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis