Browse Element(s) Details


Os.23391.1.A1_at

Description gb:AK063150.1
DB_XREF= gi:32973168
TID=Os.23391.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23391 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-111-H06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-111-H06, full insert sequence.
FL= gb:AK063150.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2474011/11Auxin-induced protein 10A5, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g24700Os.8639.1.S1_at11/112+14327236..14328144auxin-induced protein TGSAUR12, putative, expressed
LOC_Os02g24710NANA2+14328976..14329413hypothetical protein
LOC_Os02g24720OsAffx.24410.1.S1_at10/112+14331198..14333118Nonspecific lipid-transfer protein 5 precursor, putative, expressed
LOC_Os02g24720OsAffx.24410.1.S1_x_at10/112+14331198..14333118Nonspecific lipid-transfer protein 5 precursor, putative, expressed
LOC_Os02g24720Os.28462.1.S1_s_at1/112+14331198..14333118Nonspecific lipid-transfer protein 5 precursor, putative, expressed
LOC_Os02g24720OsAffx.2442.1.S1_x_at1/112+14331198..14333118Nonspecific lipid-transfer protein 5 precursor, putative, expressed
LOC_Os02g24730NANA2+14335798..14341916retrotransposon protein, putative, unclassified
LOC_Os02g24740Os.23391.1.A1_at11/112+14349693..14350300Auxin-induced protein 10A5, putative, expressed
LOC_Os02g24750OsAffx.24411.1.S1_at10/112+14351070..14356277expressed protein
LOC_Os02g24750Os.53874.1.S1_at6/112+14351070..14356277expressed protein
LOC_Os02g24750Os.7074.1.S1_at4/112+14351070..14356277expressed protein
LOC_Os02g24760Os.20602.2.S1_x_at9/112+14357062..14357741Transposase, putative
LOC_Os02g24770NANA2+14362871..14366083retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g24780OsAffx.29724.6.S1_x_at8/112+14368964..14373800hypothetical protein
LOC_Os02g24780OsAffx.29724.1.S1_x_at7/112+14368964..14373800hypothetical protein
LOC_Os02g24780OsAffx.29724.3.S1_x_at7/112+14368964..14373800hypothetical protein
LOC_Os02g24780OsAffx.29724.2.S1_x_at2/112+14368964..14373800hypothetical protein
LOC_Os02g24780OsAffx.29376.1.S1_x_at1/112+14368964..14373800hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009733biological_processresponse to auxin stimulus
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23391.1.A1_at--903--7431Chr02:14349828..14349852 (25 bp)
GTGTACGTCGGCATCAGCCGGAGAC
LOC_Os02g24740
Os.23391.1.A1_at--802--391Chr02:14349840..14349864 (25 bp)
ATCAGCCGGAGACGCTACATCGTGC
LOC_Os02g24740
Os.23391.1.A1_at--577--4351Chr02:14349885..14349909 (25 bp)
CCAGAGTTCCAGGAGCTTCTCAGGA
LOC_Os02g24740
Os.23391.1.A1_at--763--4151Chr02:14350031..14350055 (25 bp)
CGCGCTTGCATTGCGATTTGTTGCA
LOC_Os02g24740
Os.23391.1.A1_at--325--10731Chr02:14350051..14350075 (25 bp)
TTGCATTGCTTGCTAGGGTAGAAAT
LOC_Os02g24740
Os.23391.1.A1_at--1078--71Chr02:14350143..14350167 (25 bp)
ATTCCTATTGTAAGTTCGGCTGTGC
LOC_Os02g24740
Os.23391.1.A1_at--944--6711Chr02:14350156..14350180 (25 bp)
GTTCGGCTGTGCTGTGATCGATCGA
LOC_Os02g24740
Os.23391.1.A1_at--689--5511Chr02:14350186..14350210 (25 bp)
GAAAATTCTCAGAGCGTGCTGCCAT
LOC_Os02g24740
Os.23391.1.A1_at--896--211Chr02:14350209..14350233 (25 bp)
ATTTGGCTGCCCTGTGAGAACGATA
LOC_Os02g24740
Os.23391.1.A1_at--725--5971Chr02:14350224..14350248 (25 bp)
GAGAACGATATTCCAACTTCCATAG
LOC_Os02g24740
Os.23391.1.A1_at--1100--3211Chr02:14350237..14350261 (25 bp)
CAACTTCCATAGATCGATCGCTCAA
LOC_Os02g24740
Target Sequence 
GTGTACGTCGGCATCAGCCGGAGACGCTACATCGTGCCGGTGGCGTGCCNTGCGGCGCCAGAGTTCCAGGAGCTTCTCAG
GAAGGCCGAGGAGGAGTTTGGCTTCGACCACGACATGGGTNTCACCCTGCCCTGCGATGAGGCCACCTTCCACGGCGTCC
TCGCCTCCGCCTCTGCCACCTCCATCAGATGAGATGAGGCAGGCGCGCTTGCATTGCGATTTGTTGCATTGCTTGCTAGG
GTAGAAATTGAGGCATGATCGTGCATGGATGTTGGCACNTTCTTATTTTTTTCCTCTCCTCTCTAGCTAGCTTCAATTCC
TATTGTAAGTTCGGCTGTGCTGTGATCGATCGAGTTGTGAAAATTCTCAGAGCGTGCTGCCATTTGGCTGCCCTGTGAGA
ACGATATTCCAACTTCCATAGATCGATCGCTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23391.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis