Browse Element(s) Details


Os.8642.1.S1_a_at

Description gb:AB018444.1
DB_XREF= gi:6006311
GEN=Osnph1a
TID=Os.8642.1
CNT=20
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.8642 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) mRNA for nonphototrophic hypocotyl 1a, complete cds.
PROD=nonphototrophic hypocotyl 1a
FL= gb:AB018444.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0114011/11Nonphototropic hypocotyl protein 1, putative, expressed
LOC_Os12g0114011/11Nonphototropic hypocotyl protein 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g01109OsAffx.30761.2.S1_s_at11/1111+52703..54852hypothetical protein
LOC_Os11g01109OsAffx.30761.1.S1_at4/1111+52703..54852hypothetical protein
LOC_Os11g01118NANA11+56826..57134hypothetical protein
LOC_Os11g01130OsAffx.31534.1.S1_at11/1111+67344..67955Homeobox domain containing protein
LOC_Os11g01140Os.8642.1.S1_a_at11/1111+78401..93104Nonphototropic hypocotyl protein 1, putative, expressed
LOC_Os11g01140Os.8642.4.S1_x_at11/1111+78401..93104Nonphototropic hypocotyl protein 1, putative, expressed
LOC_Os11g01140Os.53644.1.S1_at1/1111+78401..93104Nonphototropic hypocotyl protein 1, putative, expressed
LOC_Os11g01154OsAffx.7452.1.S1_at11/1111+93456..98901trans-2-enoyl-CoA reductase, mitochondrial precursor, putative, expressed
LOC_Os11g01154Os.7883.1.A1_at11/1111+93456..98901trans-2-enoyl-CoA reductase, mitochondrial precursor, putative, expressed
LOC_Os11g01170Os.2616.1.S1_at10/1111+99872..103175tonneau 1b, putative, expressed
LOC_Os11g01180Os.50258.2.S1_a_at11/1111+106236..107210Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os11g01190Os.15622.1.S1_at10/1111+108647..115986expressed protein
LOC_Os11g01200Os.11572.1.S1_at5/1111+116181..123018leucine-rich repeat family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009637biological_processresponse to blue light
GO:0009638biological_processphototropism
GO:0009902biological_processchloroplast relocation
GO:0009903biological_processchloroplast avoidance movement
GO:0009904biological_processchloroplast accumulation movement
GO:0010118biological_processstomatal movement
GO:0010119biological_processregulation of stomatal movement
GO:0046777biological_processprotein amino acid autophosphorylation
GO:0005737cellular_componentcytoplasm
GO:0009898cellular_componentinternal side of plasma membrane
GO:0016020cellular_componentmembrane
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0009882molecular_functionblue light photoreceptor activity
GO:0010181molecular_functionFMN binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8642.1.S1_a_at--1115--1672Chr12:88268..88292 (25 bp)
AGCCTAGCGGCGAGGCAGCTAATGT
LOC_Os12g01140
Os.8642.1.S1_a_at--685--3812Chr12:88314..88338 (25 bp)
CTGCCAACAGGCTAGGGTCCTACGA
LOC_Os12g01140
Os.8642.1.S1_a_at--236--9952Chr12:88326..88350 (25 bp)
TAGGGTCCTACGAGGGAGCCAATGA
LOC_Os12g01140
Os.8642.1.S1_a_at--570--10032Chr12:88378..88402 (25 bp)
TATAAATTGGCCTCTTATACGCGCC
LOC_Os12g01140
Os.8642.1.S1_a_at--59--6032Chr12:88630..88654 (25 bp)
GAGAGGGACATATATTGTTGCTTGC
LOC_Os12g01140
Os.8642.1.S1_a_at--768--2132Chr12:88710..88734 (25 bp)
ACAGACCTTGTTGTGTTTGAACCTA
LOC_Os12g01140
Os.8642.1.S1_a_at--939--6852Chr12:88724..88748 (25 bp)
GTTTGAACCTAGTATGCGATCCATC
LOC_Os12g01140
Os.8642.1.S1_a_at--774--6912Chr12:88735..88759 (25 bp)
GTATGCGATCCATCATCTTAATAAG
LOC_Os12g01140
Os.8642.1.S1_a_at--673--3012Chr12:88764..88788 (25 bp)
AATGCAGCGCAATGTGTGCCAGTGA
LOC_Os12g01140
Os.8642.1.S1_a_at--627--1172Chr12:88791..88815 (25 bp)
AGTAATGAGCTTGACTTGAGTTTAT
LOC_Os12g01140
Os.8642.1.S1_a_at--554--5732Chr12:88862..88886 (25 bp)
GACGGTACGTAAACTTGTCAAGTGG
LOC_Os12g01140
Target Sequence 
AGCCTAGCGGCGAGGCAGCTAATGTATAGGTTGCTACATAGGGATCCTGCCAACAGGCTAGGGTCCTACGAGGGAGCCAA
TGAGATAAAAGGACATCCCTTTTTCCGTGGTATAAATTGGCCTCTTATACGCGCCACGGCGCCTCCAAAGTTGGAGATCC
CACTATTTTCCAAGGATGACATGGAGAAGAAGGGACTAGTAACAANATNANCCGCACGGATATNTTCTGAAGNNCCCTTG
ATGATGANCNTTCAATAAAAGAGAGGGACATATATTGTTGCTTGCTTTGCGTNCGTAGGCCAAGATTAAGATTATGTCAT
GTAAATATGTAATGTANCGTACAGACCTTGTTGTGTTTGAACCTAGTATGCGATCCATCATCTTAATAAGATGCAATGCA
GCGCAATGTGTGCCAGTGAACAGTAATGAGCTTGACTTGAGTTTATAGTAGTCTAGTATAGTGAGTAGAGGAAAAAAAGA
GTAAATTGTATTGACGGTACGTAAACTTGTCAAGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8642.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis