Browse Element(s) Details


Os.8697.1.S1_at

Description gb:AK062906.1
DB_XREF= gi:32972924
TID=Os.8697.1
CNT=47
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8697 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0046B10.17 (P0046B10.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-108-F10, full insert sequence.
FL= gb:AK062906.1 gb:AK066561.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4270011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g42650Os.3455.1.S1_at11/111+24582170..24586788cytochrome c oxidase subunit, putative, expressed
LOC_Os01g42660OsAffx.23637.2.S1_s_at11/111+24591364..24593347hypothetical protein
LOC_Os01g42660OsAffx.23637.1.S1_at3/111+24591364..24593347hypothetical protein
LOC_Os01g42670OsAffx.23638.1.S1_at9/111+24596639..24599250hypothetical protein
LOC_Os01g42670OsAffx.23637.1.S1_at2/111+24596639..24599250hypothetical protein
LOC_Os01g42679NANA1+24599981..24600723NA
LOC_Os01g42690Os.35061.1.S1_at11/111+24603943..24607847Phospholipase/Carboxylesterase family protein, expressed
LOC_Os01g42690Os.35061.2.S1_at11/111+24603943..24607847Phospholipase/Carboxylesterase family protein, expressed
LOC_Os01g42690Os.35061.2.S1_x_at11/111+24603943..24607847Phospholipase/Carboxylesterase family protein, expressed
LOC_Os01g42700Os.8697.1.S2_at11/111+24609589..24612154expressed protein
LOC_Os01g42700Os.8697.1.S1_at11/111+24609589..24612154expressed protein
LOC_Os01g42710Os.1021.1.S1_at9/111+24619385..24626543LSD1 zinc finger family protein, expressed
LOC_Os01g42720Os.34525.2.S1_x_at11/111+24626992..24628080expressed protein
LOC_Os01g42720Os.34525.2.S1_at11/111+24626992..24628080expressed protein
LOC_Os01g42720OsAffx.11445.1.S1_s_at11/111+24626992..24628080expressed protein
LOC_Os01g42720Os.34525.1.S1_s_at11/111+24626992..24628080expressed protein
LOC_Os01g42720Os.34525.1.S1_x_at11/111+24626992..24628080expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8697.1.S1_at--391--4151Chr01:24611812..24611836 (25 bp)
CGCGCGTTTACTGGGAGGATCTGTT
LOC_Os01g42700
Os.8697.1.S1_at--472--6171Chr01:24611798..24611822 (25 bp)
GAGGATCTGTTGTATTTGGACGTTT
LOC_Os01g42700
Os.8697.1.S1_at--141--10431Chr01:24611783..24611807 (25 bp)
TTGGACGTTTTAGACTGGATCGAGT
LOC_Os01g42700
Os.8697.1.S1_at--279--6551Chr01:24611752..24611776 (25 bp)
GATTTTGCGGTGTTCTTGCTGTGAC
LOC_Os01g42700
Os.8697.1.S1_at--753--8931Chr01:24611731..24611755 (25 bp)
TGACGGGATTCAGCTATGTAGGTGT
LOC_Os01g42700
Os.8697.1.S1_at--596--9111Chr01:24611675..24611699 (25 bp)
TGCTGCTTCTGATTCTTTCTGTGAA
LOC_Os01g42700
Os.8697.1.S1_at--187--2931Chr01:24611612..24611636 (25 bp)
AAGGACTTGTGCTATGGCCGATCTC
LOC_Os01g42700
Os.8697.1.S1_at--363--8411Chr01:24611597..24611621 (25 bp)
GGCCGATCTCTACTTTTAGTACTTC
LOC_Os01g42700
Os.8697.1.S1_at--49--7011Chr01:24611579..24611603 (25 bp)
GTACTTCGTTATGTTCTATACGGCA
LOC_Os01g42700
Os.8697.1.S1_at--1093--8271Chr01:24611558..24611582 (25 bp)
GGCATAGGAGTCCATCTCTCGATAG
LOC_Os01g42700
Os.8697.1.S1_at--399--991Chr01:24611456..24611480 (25 bp)
AGGAGGAGTCCATCTCTCGATAGAT
LOC_Os01g42700
Target Sequence 
CGCGCGTTTACTGGGAGGATCTGTTGTATTTGGACGTTTTAGACTGGATCGAGTGAGGGGGATTTTGCGGTGTTCTTGCT
GTGACGGGATTCAGCTATGTAGGTGTAGGAATCTTATGTTAACTTGTTGGGNGGCTCTGCTGCTTCTGATTCTTTCTGTG
AATCTGGAGTAACAAATTCTTTCTGTGAATCTGGAGTAACAAGGACTTGTGCTATGGCCGATCTCTACTTTTAGTACTTC
GTTATGTTCTATACGGCATAGGAGTCCATCTCTCGATAGATAAGAGTTCTCTGATTTTGGATGGGGATTTGCTTGATGGA
TCCGGAGTCATATAACATGTTTGCAAAAAAAGAAAAAGGAGGAGTCCATCTCTCGATAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8697.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis