Browse Element(s) Details


Os.8701.1.S1_at

Description gb:AK059891.1
DB_XREF= gi:32969909
TID=Os.8701.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.8701 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 20551 putative serinethreonine kinase mRNA, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-208-D03, full insert sequence.
FL= gb:AK059891.1 gb:AY224521.1 gb:AK103863.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0242011/11EF hand family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g02370Os.27951.1.S1_at11/118+934508..938062galactosyltransferase family protein, putative, expressed
LOC_Os08g02380Os.18328.1.S1_s_at11/118+941334..946233Kinesin motor domain containing protein, expressed
LOC_Os08g02380OsAffx.16789.1.S1_at11/118+941334..946233Kinesin motor domain containing protein, expressed
LOC_Os08g02390Os.27914.1.S1_at11/118+947342..949799RNA recognition motif family protein, expressed
LOC_Os08g02400OsAffx.16790.1.S1_s_at11/118+950035..95232240S ribosomal protein S13, putative, expressed
LOC_Os08g02410Os.15168.1.S1_at11/118+956242..95818840S ribosomal protein S13, putative, expressed
LOC_Os08g02420Os.8701.1.S1_at11/118+962973..963903EF hand family protein, expressed
LOC_Os08g02430OsAffx.16791.1.S1_at11/118+964591..965055hypothetical protein
LOC_Os08g02440Os.52478.1.S1_at11/118+967944..972565leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os08g02450Os.53900.1.S1_at11/118+974865..977756Sodium/hydrogen exchanger family protein, expressed
LOC_Os08g02460Os.25130.1.S1_at10/118+977708..981577expressed protein
LOC_Os08g02470NANA8+988034..993870retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005513biological_processdetection of calcium ion
GO:0019722biological_processcalcium-mediated signaling
GO:0004871molecular_functionsignal transducer activity
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8701.1.S1_at--466--4611Chr08:963382..963406 (25 bp)
GCGAGAAGCTCGAGCCCCACGAGTT
LOC_Os08g02420
Os.8701.1.S1_at--175--4231Chr08:963291..963315 (25 bp)
CCGCATCGTCGCCAAATAATTTGTC
LOC_Os08g02420
Os.8701.1.S1_at--84--9532Chr08:963228..963252 (25 bp)
TCTCAGGATCCACAGTTTGACACAT
LOC_Os08g02420
Os.8701.1.S1_at--1012--351Chr08:963205..963229 (25 bp)
ATAATAACTCTCTCTTGCTTGTCGT
LOC_Os08g02420
Os.8701.1.S1_at--596--7211Chr08:963185..963209 (25 bp)
GTCGTTTCCTTACCTATCATGTGAT
LOC_Os08g02420
Os.8701.1.S1_at--92--791Chr08:963167..963191 (25 bp)
ATGTGATCTCTCCTGATTTGTGCTT
LOC_Os08g02420
Os.8701.1.S1_at--37--3771Chr08:963134..963158 (25 bp)
CTCTATTTTGTGTTTTCATTCCGGT
LOC_Os08g02420
Os.8701.1.S1_at--807--9551Chr08:963119..963143 (25 bp)
TCATTCCGGTGTGATTTGGACAACC
LOC_Os08g02420
Os.8701.1.S1_at--857--631Chr08:963041..963065 (25 bp)
ATGCTTTGCGTTTCGCTCTGTTCAA
LOC_Os08g02420
Os.8701.1.S1_at--466--10631Chr08:963030..963054 (25 bp)
TTCGCTCTGTTCAATACTGCAATGT
LOC_Os08g02420
Os.8701.1.S1_at--716--271Chr08:962978..963002 (25 bp)
ATATGTGGATCTGGCTTATTATCGG
LOC_Os08g02420
Target Sequence 
GCGAGAAGCTCGAGCCCCACGAGTTCGACGAGTGGATCCGCGAGGTCGACGTCGCCCCCGACGGCACCATCCGCTACGAC
GACTTCATCCGCCGCATCGTCGCCAAATAATTTGTCATTTCTGGTTTTCTCCCCTCTCTCCCTCTCTCTCCCCCTCTCAG
GATCCACAGTTTGACACATAATAACTCTCTCTTGCTTGTCGTTTCCTTACCTATCATGTGATCTCTCCTGATTTGTGCTT
TGNTTGCTCTCTATTTTGTGTTTTCATTCCGGTGTGATTTGGACAACCTAGGGTTTGGATAATGGTGTGATTAATCGATT
GATGGATGGATCTGATTAATGATGCTTTGCGTTTCGCTCTGTTCAATACTGCAATGTAAATTGTGGATCTATCTATCATT
CAAAATATGTGGATCTGGCTTATTATCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8701.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis