Browse Element(s) Details


Os.8716.1.S1_at

Description gb:AK073540.1
DB_XREF= gi:32983563
TID=Os.8716.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8716 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033042J20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033042J20, full insert sequence.
FL= gb:AK073540.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6193011/11SAC3/GANP family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g61890Os.5404.4.S1_at11/111+36140930..36147714AT hook motif family protein, expressed
LOC_Os01g61890Os.5404.1.S1_a_at11/111+36140930..36147714AT hook motif family protein, expressed
LOC_Os01g61890Os.5404.4.S1_x_at11/111+36140930..36147714AT hook motif family protein, expressed
LOC_Os01g61890Os.5404.1.S2_at10/111+36140930..36147714AT hook motif family protein, expressed
LOC_Os01g61900Os.27209.1.S1_at11/111+36153984..36155621CCT motif family protein, expressed
LOC_Os01g61910Os.8181.1.S1_at11/111+36159821..36162884expressed protein
LOC_Os01g61920NANA1+36167388..36168113Histone H4, putative, expressed
LOC_Os01g61930Os.35165.1.S1_at11/111+36171524..36181814SAC3/GANP family protein, expressed
LOC_Os01g61930Os.8716.1.S1_at11/111+36171524..36181814SAC3/GANP family protein, expressed
LOC_Os01g61940Os.35425.1.S1_at11/111+36188116..36190751stigma/style ABC transporter, putative, expressed
LOC_Os01g61940Os.49930.1.S2_x_at1/111+36188116..36190751stigma/style ABC transporter, putative, expressed
LOC_Os01g61950OsAffx.21764.1.S1_at11/111+36193638..36194192hypothetical protein
LOC_Os01g61960OsAffx.23888.1.S1_at11/111+36195770..36196597hypothetical protein
LOC_Os01g61970Os.6681.1.S1_at10/111+36197920..36200047Lung seven transmembrane receptor family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8716.1.S1_at--589--4951Chr01:36181310..36181334 (25 bp)
GCATTTTTATCACTCATGTGGCACT
LOC_Os01g61930
Os.8716.1.S1_at--1046--1011Chr01:36181344..36181368 (25 bp)
AGGTATTTCTCGATTGCATGTAGCA
LOC_Os01g61930
Os.8716.1.S1_at--246--2731Chr01:36181434..36181458 (25 bp)
AAGCACGGTCCCTTGTCGAAGAGAA
LOC_Os01g61930
Os.8716.1.S1_at--934--5011Chr01:36181473..36181497 (25 bp)
GCAGGTCGCTTTCTATTATACTCAA
LOC_Os01g61930
Os.8716.1.S1_at--753--10171Chr01:36181489..36181513 (25 bp)
TATACTCAAAACGTGCTCTGGGCCT
LOC_Os01g61930
Os.8716.1.S1_at--148--7571Chr01:36181508..36181532 (25 bp)
GGGCCTCTGAATCTCAGATGCTGTG
LOC_Os01g61930
Os.8716.1.S1_at--789--511Chr01:36181535..36181559 (25 bp)
ATCGTTGGCATGTTGCTAGCTCTAC
LOC_Os01g61930
Os.8716.1.S1_at--143--3831Chr01:36181564..36181588 (25 bp)
CTGCAGCAGTTCCATTTTGACAAAC
LOC_Os01g61930
Os.8716.1.S1_at--1147--3751Chr01:36181630..36181654 (25 bp)
CTCGAAGTATACATTGGCGGGCATT
LOC_Os01g61930
Os.8716.1.S1_at--788--7551Chr01:36181648..36181672 (25 bp)
GGGCATTACTTTTGTACCGTCCCAG
LOC_Os01g61930
Os.8716.1.S1_at--325--7771Chr01:36181749..36181773 (25 bp)
GGTGACCCTGATGTTACTCATTTCA
LOC_Os01g61930
Target Sequence 
GCATTTTTATCACTCATGTGGCACTGAACTTCGAAGGTATTTCTCGATTGCATGTAGCAATGCCTGTAGAGGAATGTTCT
GTTAAATGCAGGGTAGGACCTTGAAATGGATCAGCTGAAGGGGGAAGCACGGTCCCTTGTCGAAGAGAACAGAATGCACA
TGAGCAGGTCGCTTTCTATTATACTCAAAACGTGCTCTGGGCCTCTGAATCTCAGATGCTGTGGGATCGTTGGCATGTTG
CTAGCTCTACAGCCCTGCAGCAGTTCCATTTTGACAAACAAAATTCTGGAGGCAGCATTAACCGAAAAAAAAAAANNNNN
CTCGAAGTATACATTGGCGGGCATTACTTTTGTACCGTCCCAGCCAGANGACAAGTGTACATGTTGAGATGTAGTNGTAC
CTTCAGGCTTCAGTGTATTGTACAATTTTTGTTTACATNGGTGACCCTGATGTTACTCATTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8716.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis